GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000190-TA|BGIBMGA000190-PA|undefined
         (99 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   0.45 
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    20   4.2  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    20   5.5  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    19   7.3  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    19   9.7  

>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.4 bits (48), Expect = 0.45
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 52  VDYVPGPLAVVNAGMVTASTVKTYVSVVGW 81
           +D   G +A +NA  V    +KT +++ GW
Sbjct: 76  LDVDAGTIAKLNALKVKNPNLKTLIAIGGW 105


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 52  VDYVPGPLAVVNAGMVTASTVKTYVSVVGW 81
           +D   G L   NA  +    +KT V++ GW
Sbjct: 72  LDVNQGNLKKFNALKLKNPNLKTLVAIGGW 101


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 5.5
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 53  DYVPGPLAVVNAGMVTASTVKTYVSVVGW 81
           D   G  A V A       +KT +S+ GW
Sbjct: 77  DIEKGNFAEVEALKEINPNLKTIISIGGW 105


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 6   VGVLMNLPLHGAQVW 20
           V V +NLP    QVW
Sbjct: 160 VAVKINLPESRVQVW 174


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 19.0 bits (37), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 4   MYVGVLMNLPLHG 16
           M V V MN+ +HG
Sbjct: 147 MSVNVSMNMTMHG 159


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.139    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,681
Number of Sequences: 317
Number of extensions: 342
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 99
length of database: 114,650
effective HSP length: 48
effective length of query: 51
effective length of database: 99,434
effective search space:  5071134
effective search space used:  5071134
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.2 bits)
S2: 37 (19.0 bits)