GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000190-TA|BGIBMGA000190-PA|undefined
         (99 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y12322-1|CAA72991.1| 1191|Drosophila melanogaster u-shaped protein.    27   3.9  
BT015278-1|AAT94507.1| 1191|Drosophila melanogaster LD12631p pro...    27   3.9  
AE014134-116|AAF51488.2| 1191|Drosophila melanogaster CG2762-PA ...    27   3.9  

>Y12322-1|CAA72991.1| 1191|Drosophila melanogaster u-shaped protein.
          Length = 1191

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 46  CDMRQPVDYVPGPLAVVNAGMVTAST 71
           C + +   ++PGPL   N+G+V   T
Sbjct: 456 CSLIRAASFIPGPLPTPNSGIVNPET 481


>BT015278-1|AAT94507.1| 1191|Drosophila melanogaster LD12631p
           protein.
          Length = 1191

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 46  CDMRQPVDYVPGPLAVVNAGMVTAST 71
           C + +   ++PGPL   N+G+V   T
Sbjct: 456 CSLIRAASFIPGPLPTPNSGIVNPET 481


>AE014134-116|AAF51488.2| 1191|Drosophila melanogaster CG2762-PA
           protein.
          Length = 1191

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)

Query: 46  CDMRQPVDYVPGPLAVVNAGMVTAST 71
           C + +   ++PGPL   N+G+V   T
Sbjct: 456 CSLIRAASFIPGPLPTPNSGIVNPET 481


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.326    0.139    0.444 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,477
Number of Sequences: 52641
Number of extensions: 60934
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 3
length of query: 99
length of database: 24,830,863
effective HSP length: 73
effective length of query: 26
effective length of database: 20,988,070
effective search space: 545689820
effective search space used: 545689820
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)