GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000189-TA|BGIBMGA000189-PA|IPR000357|HEAT
         (680 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   6.2  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   8.2  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   8.2  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   8.2  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   8.2  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 532 SLLALCLLAHHYRHC 546
           S+ ALC   HH+ HC
Sbjct: 462 SVDALCNTLHHWHHC 476


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 660 QHRQYRALDRSRDKLYDK 677
           ++R+YR  DR  +KLY++
Sbjct: 8   RNREYRKKDRQYEKLYNE 25


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 660 QHRQYRALDRSRDKLYDK 677
           ++R+YR  DR  +KLY++
Sbjct: 8   RNREYRKKDRQYEKLYNE 25


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 660 QHRQYRALDRSRDKLYDK 677
           ++R+YR  DR  +KLY++
Sbjct: 8   RNREYRKKDRQYEKLYNE 25


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.0 bits (47), Expect = 8.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 660 QHRQYRALDRSRDKLYDK 677
           ++R+YR  DR  +KLY++
Sbjct: 8   RNREYRKKDRQYEKLYNE 25


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,024
Number of Sequences: 429
Number of extensions: 5550
Number of successful extensions: 59
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 5
length of query: 680
length of database: 140,377
effective HSP length: 62
effective length of query: 618
effective length of database: 113,779
effective search space: 70315422
effective search space used: 70315422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 47 (23.0 bits)