Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000188-TA|BGIBMGA000188-PA|IPR003038|Defender against
death DAD protein
         (112 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    24   0.32 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   3.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        20   6.8  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 24.2 bits (50), Expect = 0.32
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 17  TKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLS 57
           TK   K+ +I   +  +F+T  + F YC ++    FN++ S
Sbjct: 484 TKQQSKIHLI---VRSVFVTTYLMFDYCTVLRVQRFNNYQS 521


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase
          reverse transcriptase protein.
          Length = 596

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 1  MSSLTAVIPKLYQEYTTKTPKKLKIIDAYL 30
          ++ L  +IPK Y   TT   +  K+++  L
Sbjct: 49 LALLQEIIPKSYFGTTTNLKRFYKVVEKIL 78


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 8/25 (32%), Positives = 14/25 (56%)

Query: 64  SCFVLGVCLRLQVNPENKNEFQGLS 88
           S  V+G  L +  NP  +N+  G++
Sbjct: 445 STSVVGDMLNMNWNPSAQNDLSGVN 469


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.332    0.146    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,359
Number of Sequences: 317
Number of extensions: 1138
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 112
length of database: 114,650
effective HSP length: 49
effective length of query: 63
effective length of database: 99,117
effective search space:  6244371
effective search space used:  6244371
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (21.0 bits)
S2: 38 (19.4 bits)