Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000188-TA|BGIBMGA000188-PA|IPR003038|Defender against
death DAD protein
         (112 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12)               28   2.0  
SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)                  27   2.6  
SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)                 27   2.6  
SB_12150| Best HMM Match : DUF590 (HMM E-Value=0)                      27   3.5  
SB_13491| Best HMM Match : PAN (HMM E-Value=0.0055)                    26   6.1  
SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)                      26   8.1  
SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)                 26   8.1  
SB_4180| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.1  

>SB_55318| Best HMM Match : zf-DHHC (HMM E-Value=2.5e-12)
          Length = 341

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 29  YLFYIFLTAVIQFGYCCLVGTFPF 52
           Y +   L AV+  GY C +  FPF
Sbjct: 170 YYYSFLLQAVVGLGYACYLAIFPF 193


>SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
          Length = 314

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 12  YQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCF--VLG 69
           Y E  T     + ++  ++F    T +  F     +  F   + L GF  T+ CF   L 
Sbjct: 143 YNEVVTNFRICIVLVVIWIFAAVFTILRMFYPNTAINAFFTTAILIGFAVTIFCFGQTLR 202

Query: 70  VCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLHIVVI 108
           +  + +   + +N+ Q L + + F   +   L +H++ +
Sbjct: 203 IVRKHRTQIQAQNQ-QSLESMKKFKKSVLTMLYIHLLFL 240


>SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
          Length = 325

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 12  YQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTVSCF--VLG 69
           Y E  T     + ++  ++F    T +  F     +  F   + L GF  T+ CF   L 
Sbjct: 154 YNEVVTNFRICIVLVVIWIFAAVFTILRMFYPNTAINAFFTTAILIGFAVTIFCFGQTLR 213

Query: 70  VCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLHIVVI 108
           +  + +   + +N+ Q L + + F   +   L +H++ +
Sbjct: 214 IVRKHRTQIQAQNQ-QSLESMKKFKKSVLTMLYIHLLFL 251


>SB_12150| Best HMM Match : DUF590 (HMM E-Value=0)
          Length = 393

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 30  LFYIFLTAVIQFGYCCL-VGTFPFNSFLS 57
           LFY +L  VIQFG+  + V  FP   F +
Sbjct: 142 LFYEYLEMVIQFGFITIFVTAFPLGPFFA 170


>SB_13491| Best HMM Match : PAN (HMM E-Value=0.0055)
          Length = 91

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 52 FNSFLSGFISTVSCFVLGVCLRLQVNPENKNEFQGLSAERGFADFI 97
          FN+    F   + CF+   C+   + P NK + +  + E   AD +
Sbjct: 28 FNTSADAFQCKMKCFLNDKCMSFNIGPVNKTDKR--ACELSLADLV 71


>SB_939| Best HMM Match : PH (HMM E-Value=6.9e-14)
          Length = 1030

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 40  QFGYCCLVGTFPFNSFLSGFISTVSCFVLGVCL 72
           +F    L+   P    +SG+++  SC V+ +CL
Sbjct: 704 KFASSPLLAQMPEKEAMSGWVTKASCDVVNICL 736


>SB_37249| Best HMM Match : UDPGP (HMM E-Value=6.8e-18)
          Length = 427

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 71  CLRLQVNPENKNEFQGLSAERGFAD--FIFAHLVLHIVVINFI 111
           C+ L VN   +++   LSA   FA+  F+FA++   I  I+F+
Sbjct: 32  CISLVVNRAKRHQQCWLSAAELFANITFVFANIFFVIANISFV 74


>SB_4180| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)

Query: 21  KKLKIIDAYLFYIFLTAVIQFGY 43
           K++K   AYL+YIFL   I+  Y
Sbjct: 128 KRVKARSAYLYYIFLDDDIRMAY 150


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.332    0.146    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,477,380
Number of Sequences: 59808
Number of extensions: 123318
Number of successful extensions: 258
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 255
Number of HSP's gapped (non-prelim): 8
length of query: 112
length of database: 16,821,457
effective HSP length: 73
effective length of query: 39
effective length of database: 12,455,473
effective search space: 485763447
effective search space used: 485763447
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 54 (25.8 bits)