Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000188-TA|BGIBMGA000188-PA|IPR003038|Defender against
death DAD protein
(112 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0783 + 19607871-19607951,19608027-19608074,19608719-196088... 113 2e-26
10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278... 31 0.21
08_02_1257 - 25646029-25646054,25646139-25646236,25646609-256467... 29 1.1
02_05_0161 + 26384079-26384086,26386173-26386226,26386376-263864... 27 3.4
01_05_0340 - 21139885-21139978,21140169-21140272,21140379-211405... 27 3.4
01_01_0565 - 4159946-4160042,4160140-4160243,4160378-4160533,416... 27 3.4
05_05_0118 - 22504483-22504566,22504650-22504742,22504852-225049... 26 7.8
02_01_0570 - 4195409-4195443,4196245-4196333,4196539-4196630,419... 26 7.8
>04_03_0783 +
19607871-19607951,19608027-19608074,19608719-19608806,
19608887-19608930,19609016-19609099
Length = 114
Score = 113 bits (273), Expect = 2e-26
Identities = 57/111 (51%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Query: 2 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFIS 61
S +I L + Y TP LKIID Y+ + TA+IQ Y +VG+FPFNSFLSG +S
Sbjct: 6 SDAKLLIQSLGKAYAA-TPTNLKIIDLYVVFAVATALIQVVYMGIVGSFPFNSFLSGVLS 64
Query: 62 TVSCFVLGVCLRLQVNPENKNEFQGLSAERGFADFIFAHLVLHIVVINFIG 112
+ VL VCLR+QVN +NK EF+ L ER FADF+ +LVLH+V++NF+G
Sbjct: 65 CIGTAVLAVCLRIQVNKDNK-EFKDLPPERAFADFVLCNLVLHLVIMNFLG 114
>10_07_0176 -
13826764-13827064,13827271-13827377,13827474-13827836,
13827912-13828079,13828153-13828374,13828784-13829023,
13829640-13829719,13829853-13830018,13830720-13830783,
13830861-13830962,13831085-13831227,13831370-13831474,
13831551-13831706,13832125-13832241,13832315-13832392,
13832466-13832550,13833334-13833455,13833546-13833611,
13835190-13835284,13835427-13835523,13835873-13835983,
13836083-13836164,13836292-13836353,13836620-13836685,
13838002-13838232
Length = 1142
Score = 31.1 bits (67), Expect = 0.21
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Query: 2 SSLTAVIPKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTFPFNSF--LSGF 59
+SL+ PKLYQE T K ++I + F+ F +++ + + + S + G
Sbjct: 890 ASLSKKYPKLYQEGIRNTFFKWRVIAVWAFFAFYQSIVFYYFTAAASRYGHGSSGKILGL 949
Query: 60 --ISTV--SCFVLGVCLRL 74
+ST+ +C V+ V LRL
Sbjct: 950 WDVSTMAFTCVVVTVNLRL 968
>08_02_1257 - 25646029-25646054,25646139-25646236,25646609-25646700,
25646786-25646893,25647212-25647346,25647648-25647752,
25647951-25648088,25648865-25648963,25649079-25649195,
25649446-25649610,25649955-25650014,25650395-25650559,
25650636-25650746,25651220-25651333,25651466-25651531,
25651857-25651994,25652303-25652386,25652468-25652510,
25652621-25652676,25652772-25652880,25652944-25653026,
25653127-25653210,25653383-25653454,25653557-25653634,
25653717-25653800,25653892-25653962,25654095-25654164,
25654314-25654403,25654500-25654661,25654702-25654817,
25654946-25654988,25655069-25655185,25655897-25656046
Length = 1082
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 78 PENKNEFQGLSAERGFADFIFAHLVLHIVVINFIG 112
PE +N F+G++ F I V I++I F+G
Sbjct: 985 PEERNVFKGITKNHLFMGIIAITTVFQILIIEFLG 1019
>02_05_0161 +
26384079-26384086,26386173-26386226,26386376-26386448,
26386775-26386822,26386906-26386953,26387990-26388061,
26388156-26388311,26388428-26388531,26388628-26388724
Length = 219
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 29 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 63
YLF + L G CL+ F +S+L +IST+
Sbjct: 23 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTI 57
>01_05_0340 -
21139885-21139978,21140169-21140272,21140379-21140534,
21140622-21140693,21140782-21140829,21140923-21140970,
21141807-21141879,21142333-21142346
Length = 202
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 29 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 63
YLF + L G CL+ F +S+L +IST+
Sbjct: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTI 41
>01_01_0565 -
4159946-4160042,4160140-4160243,4160378-4160533,
4160629-4160700,4161796-4161843,4161923-4161970,
4162295-4162367,4163188-4163201
Length = 203
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 29 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 63
YLF + L G CL+ F +S+L +IST+
Sbjct: 7 YLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTI 41
>05_05_0118 -
22504483-22504566,22504650-22504742,22504852-22504914,
22505048-22505145,22505378-22505478,22505581-22505653,
22505872-22505910,22506946-22507018
Length = 207
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 29 YLFYIFLTAVIQFGYCCLVGTFPFNSFLSGFISTV 63
Y ++ L+++ G CL+ F SF + FI+T+
Sbjct: 27 YKLFLVLSSIQCVGKSCLLLRFSDGSFTTSFITTI 61
>02_01_0570 -
4195409-4195443,4196245-4196333,4196539-4196630,
4196726-4196833,4196984-4197118,4197211-4197256,
4197358-4197458,4198285-4198422,4198503-4198601,
4198740-4198856,4199195-4199356,4199734-4199793,
4200371-4200538,4200608-4200718,4201401-4201499,
4201579-4201644,4202407-4202490,4202563-4202605,
4202684-4202739,4202817-4202925,4203442-4203524,
4203842-4203925,4204311-4204382,4204462-4204539,
4204633-4204716,4204806-4204876,4205943-4206012,
4206495-4206626,4207168-4207284,4208185-4208367
Length = 963
Score = 25.8 bits (54), Expect = 7.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 78 PENKNEFQGLSAERGFADFIFAHLVLHIVVINFIG 112
P N F G+S F + +VL +++I F+G
Sbjct: 866 PYELNIFDGVSRNHLFLAVVSITVVLQVIIIEFLG 900
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.332 0.146 0.446
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,220
Number of Sequences: 37544
Number of extensions: 105259
Number of successful extensions: 233
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 224
Number of HSP's gapped (non-prelim): 8
length of query: 112
length of database: 14,793,348
effective HSP length: 73
effective length of query: 39
effective length of database: 12,052,636
effective search space: 470052804
effective search space used: 470052804
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 54 (25.8 bits)
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