GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000188-TA|BGIBMGA000188-PA|IPR003038|Defender against
death DAD protein
         (112 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    23   1.1  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    23   1.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   8.0  

>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
          receptor protein.
          Length = 322

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 9  PKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTF 50
          P L +EY      KLKII+   F   L   + +   CL+  F
Sbjct: 35 PLLKKEYPLVMDTKLKIIEILQF--ILDVRLDYRISCLLSIF 74


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
          1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 9  PKLYQEYTTKTPKKLKIIDAYLFYIFLTAVIQFGYCCLVGTF 50
          P L +EY      KLKII+   F   L   + +   CL+  F
Sbjct: 3  PLLKKEYPLVMDTKLKIIEILQF--ILDVRLDYRISCLLSIF 42


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.8 bits (39), Expect = 8.0
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 47  VGTFPFNSFLSGFISTVSCFVLGVCLRLQVNPENKNEFQGLSA 89
           V ++PF   ++   + +   V   C R+ +NP +K   Q +S+
Sbjct: 317 VPSYPFEEDINEGSNYMQTRVPAWCDRVLLNPTDKMLVQDISS 359


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.332    0.146    0.446 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,067
Number of Sequences: 429
Number of extensions: 1239
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 112
length of database: 140,377
effective HSP length: 50
effective length of query: 62
effective length of database: 118,927
effective search space:  7373474
effective search space used:  7373474
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.4 bits)
S2: 39 (19.8 bits)