Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000187-TA|BGIBMGA000187-PA|IPR002345|Lipocalin
(1103 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g65950.1 68418.m08302 expressed protein 45 2e-04
At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)... 37 0.065
At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)... 33 0.80
At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E... 32 1.8
At5g04190.1 68418.m00407 phytochrome kinase substrate-related co... 32 1.8
At3g47670.1 68416.m05189 invertase/pectin methylesterase inhibit... 30 7.4
At1g75960.1 68414.m08822 AMP-binding protein, putative similar t... 30 7.4
At3g47910.1 68416.m05224 expressed protein low similarity to non... 30 9.8
At3g46260.1 68416.m05007 protein kinase-related contains low sim... 30 9.8
At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger) fa... 30 9.8
At3g09490.1 68416.m01128 chloroplast lumen common family protein... 30 9.8
At1g54740.1 68414.m06242 expressed protein 30 9.8
>At5g65950.1 68418.m08302 expressed protein
Length = 865
Score = 45.2 bits (102), Expect = 2e-04
Identities = 43/176 (24%), Positives = 73/176 (41%), Gaps = 4/176 (2%)
Query: 348 HPGFYYQHAAQFTVKRRQAMRSLCA--EALQYPPAPDPLDGILEYYGQRPWRPGRLSADP 405
+P +YYQ AA + ++ A+ L + E Q + Y GQ + A
Sbjct: 40 YPAYYYQLAAHYLKDKKSALELLLSMSEIAQEIDSSSASITPSVYVGQFAQLLEKGEAIT 99
Query: 406 -HDPQKEQAAILALQYNERIFNHSTIIISFLGSAISQFKSFHSPRMRKQLVVEMANEYFY 464
H E+ + +R+ S II++L + F + + RM E+A EYF
Sbjct: 100 LHSITDEEYTRYTISEAKRV-QDSLQIIAWLKRSYESFTNLKAQRMAALCAFEVAREYFD 158
Query: 465 SADYGKALTLLTHMLWDYRREKWWYLASHVLNRALQCAYLAAKIQDYLQLSIEALS 520
AD A YR+E W L VL +C+ ++D+++ S+E ++
Sbjct: 159 LADPNNAKFFFDIAANLYRQEGWVTLLWEVLGYLRECSRNLDALKDFVEFSLEMVA 214
Score = 37.5 bits (83), Expect = 0.049
Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 7/145 (4%)
Query: 956 VGLYNITWRRKS-NLHGLCVMSSTALSGLPIDQCPVSVKVDYPAVIELLTSVPLKCILKG 1014
+G ++ WRR+ N+ V + L + ++ P+ + +D P L +
Sbjct: 714 LGSIHLKWRREGGNITEAYVSTKHKLPEVNVEASPLVMSLDSPPYAILGEPFTYAVRICN 773
Query: 1015 NTNTPIRLSLVVKWTDDYIFSGYKKLSVMVPPKGQVELKYNIRPLFAGNTMPPRITATVI 1074
T + ++ SG +V V PK + L Y + PL G P+IT T
Sbjct: 774 QTQLLQEAKFGLADAQSFVLSGSHSNTVSVLPKSEHVLSYKLVPLTCGEQQLPKITLT-- 831
Query: 1075 GDNSSQDAVSEMFEKAFPETIFVVP 1099
S +E A ++FV P
Sbjct: 832 ----SARYAAEFQPSAVASSVFVFP 852
>At3g55380.1 68416.m06151 ubiquitin-conjugating enzyme 14 (UBC14)
E2; UbcAT3; identical to gi:2129757, S46656
Length = 167
Score = 37.1 bits (82), Expect = 0.065
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 883 VDDPFIVMPQIKILSPWDLLIIDTELEVVDSFKNTDKTKPISCIRNLEVAEKNIASDA-I 941
VD+ + + I+ P D L + SF P + E+ N+ SD +
Sbjct: 30 VDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKV 89
Query: 942 CIQAKYNPKDNPTRVGLYNITWRRKSNLHGLCVMSSTALSGLPIDQCPVSVK 993
CI + P D+P L + W + + + + LSG P D+ P +V+
Sbjct: 90 CISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSG-PNDESPANVE 140
>At3g46460.1 68416.m05037 ubiquitin-conjugating enzyme 13 (UBC13)
E2; identical to gi:992706
Length = 166
Score = 33.5 bits (73), Expect = 0.80
Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Query: 883 VDDPFIVMPQIKILSPWDLLIIDTELEVVDSFKNTDKTKPISCIRNLEVAEKNIASDA-I 941
VD+ I + I+ P D L + SF P + ++ N+ D +
Sbjct: 29 VDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRV 88
Query: 942 CIQAKYNPKDNPTRVGLYNITWRRKSNLHGLCVMSSTALSGLPIDQCPVSVK 993
CI + P D+P+ L + W + + + + LSG P D+ P +V+
Sbjct: 89 CISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSG-PNDESPANVE 139
>At5g59300.1 68418.m07430 ubiquitin-conjugating enzyme 7 (UBC7) E2;
identical to gi:992703, SP:P42747
Length = 198
Score = 32.3 bits (70), Expect = 1.8
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 893 IKILSPWDLLIIDTELEVVDSFKNTDKTKPISCIRNLEVAEKNIASDA-ICIQAKYNPKD 951
+ I+ P D L + +F P + ++ N+ SD +CI + P D
Sbjct: 71 VTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGD 130
Query: 952 NPTRVGLYNITWRRKSNLHGLCVMSSTALSGLPIDQCPVSVK 993
+P+ L + W + + + + LSG P D+ P +V+
Sbjct: 131 DPSGYELASERWTPVHTVESIMLSIISMLSG-PNDESPANVE 171
>At5g04190.1 68418.m00407 phytochrome kinase substrate-related
contains similarity to Swiss-Prot:Q9SWI1 phytochrome
kinase substrate 1 [Arabidopsis thaliana]
Length = 406
Score = 32.3 bits (70), Expect = 1.8
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 13/136 (9%)
Query: 514 LSIEALSKNIQVPNNDKDRIFRNIMSVIHLNIPAPEP---DLPSSSQSKAVELWQSMIEK 570
+ ++ I VP DRI N + H I +PEP +PS++ +++++ + +
Sbjct: 151 VQVQESKPRIAVPKTGSDRIVSNRIVHSHQTISSPEPIRLTIPSNTVTRSIDYTANKEAR 210
Query: 571 EPL-QVAVDMANISSFLEIKPKFKQMKYRMDELIEVELYVRLTYPAVLEVKKVYLTISSQ 629
P+ + N +S L PK + + IE PA+L +K V S +
Sbjct: 211 APVSNFSFPTLNETSQLSENPKNPVLNHIKPVRIE---------PALLPIKPVLNPTSPK 261
Query: 630 SETIEIPVTDDINQTI 645
I+ T D + +
Sbjct: 262 GVIIDEEATSDASSDL 277
>At3g47670.1 68416.m05189 invertase/pectin methylesterase inhibitor
family protein similar to pectinesterase from
Arabidopsis thaliana SP|Q43867, Phaseolus vulgaris
SP|Q43111; contains Pfam profile PF04043: Plant
invertase/pectin methylesterase inhibitor
Length = 240
Score = 30.3 bits (65), Expect = 7.4
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 746 PALQGEWFPTTFTVTNNEEIAVSSTKIALSLLSSPENPNPESVTDLSLKEGEAQLQPLHI 805
P + + +VT E +S ++ SL S NPES+ +LSL+ ++ L I
Sbjct: 70 PPISSASLKSLCSVTRYPETCFNS--LSSSLNESDSKLNPESILELSLRVAAKEISNLSI 127
Query: 806 SVGNVN 811
S ++N
Sbjct: 128 SFRSIN 133
>At1g75960.1 68414.m08822 AMP-binding protein, putative similar to
AMP-binding protein GI:1903034 from [Brassica napus];
contains Pfam profile: PF00501 AMP-binding enzyme;
identical to cDNA adenosine monophosphate binding protein
8 AMPBP8 (AMPBP8) GI:20799724
Length = 544
Score = 30.3 bits (65), Expect = 7.4
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 962 TWRRKSNLHGLCVMSSTALSGLPIDQCPVSVKVDYPAVIELLTSVPLKCILKGNTNT 1018
TWR ++N LCV S+ + G+ + + P + EL SVP+ + N NT
Sbjct: 42 TWR-ETNHRCLCVASALSSIGIGRSDVVSVLSANTPEMYELQFSVPMSGAILNNINT 97
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 29.9 bits (64), Expect = 9.8
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 210 IKQHRDHLNKTTHQYLFVRHQFKLGYLNELKQDINT 245
+++ R+ LN++ H+ LF+ +F+L + + +D T
Sbjct: 771 LRKRREELNESDHELLFISSRFELDAITNVLKDAET 806
>At3g46260.1 68416.m05007 protein kinase-related contains low
similarity to light repressible receptor protein kinase
[Arabidopsis thaliana] gi|1321686|emb|CAA66376
Length = 434
Score = 29.9 bits (64), Expect = 9.8
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 995 DYPAVIELLTSVPLKCILKGNTNTPIRLSLVVKWT-DDYIFSGYKKLSVMVPPKGQVELK 1053
DYP +I+L TS P + G N P + + + D +I SG S ++P +
Sbjct: 224 DYPGLIDLTTSAP-SIDITGALNKPPEIVMTKAMSGDGFIMSGLNLPSTLLPVYLAL--- 279
Query: 1054 YNIRPLFAGNTMPPRITATVIGDNSSQDAVSEMFEKA 1090
Y P G T T + G + +F KA
Sbjct: 280 YFSEPQSLGRTQKRSFTVFLDGMQVGSHPIVPVFGKA 316
>At3g23060.1 68416.m02907 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 480
Score = 29.9 bits (64), Expect = 9.8
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 548 PEPDLPSSSQSKAVELWQSMIEKEPLQVAVDMANISSFLEIKPKFKQMKYRMDELIEVEL 607
PEP+LP + K L+ + EP +D A S+F E+ PK K + + L V L
Sbjct: 181 PEPELPPK-EPKIKNLFD--LNNEPEDNGLDEAEGSTFQEVVPKEKDLCKPIFSL-SVTL 236
Query: 608 YVRLTYPAVLEVKKVYLTISSQSETIE 634
+ T P ++E + ISS +T E
Sbjct: 237 NINDTPPDIVEPE-----ISSDDDTEE 258
>At3g09490.1 68416.m01128 chloroplast lumen common family protein 2
TPR domains; similar to chloroplast lumen proteins
[GI:4056493 (F3G5.19)(At2g37400)] and [GI:7413648
(T22P11.180),(At5g02590)] [Arabidopsis thaliana]; +
Length = 334
Score = 29.9 bits (64), Expect = 9.8
Identities = 11/44 (25%), Positives = 28/44 (63%)
Query: 560 AVELWQSMIEKEPLQVAVDMANISSFLEIKPKFKQMKYRMDELI 603
A+E ++ ++EK+P++V + + KPK +++ R++++I
Sbjct: 166 AIEAFEEILEKDPIRVDAYHYLVMEYYNSKPKLTEIEKRINKVI 209
>At1g54740.1 68414.m06242 expressed protein
Length = 280
Score = 29.9 bits (64), Expect = 9.8
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 104 YDMDWNDTQWNEKIIECASKVQSIRAAVEGHATRVAVVV-IQSRQSPPP 151
YDM +D + K+ C ++V++ R + T+ VVV Q +Q PPP
Sbjct: 29 YDMRMSDNEVENKMT-CHAEVETERVEAKRRKTKENVVVQAQKKQFPPP 76
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.320 0.134 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,465,353
Number of Sequences: 28952
Number of extensions: 1136383
Number of successful extensions: 2803
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2799
Number of HSP's gapped (non-prelim): 13
length of query: 1103
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1014
effective length of database: 9,493,832
effective search space: 9626745648
effective search space used: 9626745648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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