GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000187-TA|BGIBMGA000187-PA|IPR002345|Lipocalin
         (1103 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr...   268   1e-71
U41007-16|AAA82276.1|  288|Caenorhabditis elegans Hypothetical p...    36   0.21 
U55374-3|AAB36866.2|  589|Caenorhabditis elegans Immunoglobulin-...    33   1.1  
AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical ...    32   2.6  
AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear recep...    31   3.4  
AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical ...    31   3.4  
U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical pr...    31   4.5  
U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical pr...    31   4.5  
Z50027-2|CAA90332.3|  460|Caenorhabditis elegans Hypothetical pr...    30   7.9  
AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormo...    30   7.9  

>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical protein
            B0412.3 protein.
          Length = 1107

 Score =  268 bits (657), Expect = 1e-71
 Identities = 291/1140 (25%), Positives = 510/1140 (44%), Gaps = 110/1140 (9%)

Query: 18   KPLALIGLSGLDAVNNAVHKEIWDAFANNRRADRTPVRFKLLNNTFEFPVVKPKRNSYEW 77
            +PL L+ LSGL+ VN   H  I + F  NR AD+ P+  ++++   + P   PKR +   
Sbjct: 13   RPLQLVFLSGLNPVNKPAHNSIVNVF-RNRTADKPPLHIRVVSGELDIP---PKRETGSG 68

Query: 78   YIPKGILKKNWIHKRVSLIPAVIVIFYDMDWNDTQWNEKIIECASKVQSIRAAVEGHATR 137
               KGIL++ W  K +  +PA+IV+F D++W+   W EK  E  SKV SIR ++  H T+
Sbjct: 69   ---KGILRREWPQKYLDKVPALIVVFIDLEWDHPSWEEKKTEAESKVASIRGSLR-HGTK 124

Query: 138  VAVVVIQSRQSPPPSEYMLGAERAQALCAACEIQSKSLFVLPHGD-------HLMGYIVR 190
            +A+V+IQ + +       L A+RA  LC AC + SK LF+LP  +       +L  + ++
Sbjct: 125  IALVLIQQKSTSISDN--LAADRAHELCQACSLSSKQLFILPADNLLAPNTTNLQNFALK 182

Query: 191  LENAFYDIAQNYYHHEAKNIKQHRDHLNKTTHQYLFVRHQFKLGYLNELKQDINTAHKHY 250
            LE AF+++ Q +Y    K I+      N      L VR QFKL +L+EL+QD +TA ++Y
Sbjct: 183  LELAFHELCQAFYQQRLKTIRSRNIPNNSPA---LVVRQQFKLAFLSELRQDTHTALRNY 239

Query: 251  VHAYNNLLET--RTVDTNLHEVRTVAGYINYK-----------------LCKILFALNLP 291
              AY+   +T  +    ++ E R+V G +NYK                 +C++ F  +  
Sbjct: 240  RLAYDQCRDTVEQWDGVDVFEWRSVVGLLNYKVQQGLLKTKNSVISTRGMCELCFLHSTA 299

Query: 292  RDAISQLKSHIEKYKSR---VGSTDLL--FEHYAWLARQYSAFGELFDEAIRAGLPAIQS 346
             +AI+Q++ H   + S    +  T  L   E   W ++Q   F  LF+ ++  GL A+ +
Sbjct: 300  LEAINQMRRHTTVFFSSSPGIYPTPHLASIELLLWKSKQCYQFAHLFERSVAGGLSALAT 359

Query: 347  QHPGFYYQHAAQFTVKRRQAMRSLCAEALQ-YP-PAPDPL--DGILEYYGQRPWRPGRLS 402
             +PG +   AA         + +L   A Q  P P+PDPL       ++GQRPWR     
Sbjct: 360  LNPGTHLDQAASIYSAANTEIAALKRNAPQNVPYPSPDPLANSSSTVFFGQRPWRINHEG 419

Query: 403  ADPHDPQKEQAAILALQYNERIFNHSTIIISFLGSAISQFKSFHSPRMRKQLVVEMANEY 462
                  + E AA+ A+     + NH  +I S L +A++Q++ +   RM+K++++EMAN  
Sbjct: 420  LAT--AEVEAAAVTAI-IQRLVVNHEGVI-SLLSAALAQYQKYGCLRMKKKVMMEMANTC 475

Query: 463  FYSADYGKALTLLTHMLWDYRREKWWYLASHVLNRALQCAYLAAKIQDYLQLSIEALSKN 522
            + + +  +AL     ++ D      + +   +++RA   AY    IQDY    ++ +   
Sbjct: 476  YANNEIQRALRFWGLVVKDNALP--YSIRKDMMHRATWAAYAITSIQDYAVCCMQLMCPA 533

Query: 523  I-QVPNNDKDRIFRNIMSVIHLNIPAPEPDLPSSSQSKAVEL-WQSMIEKEPLQVAVDMA 580
              +V  +D  +   +++       P P  D+ S  Q    +L WQ ++++ P  V     
Sbjct: 534  YSEVLPSDCVKGLLDVLDGKPPGSPFPNDDI-SQEQLHTYQLQWQHVLQEHPAFVVQASK 592

Query: 581  NISSFLEIKPKF---------KQMKYRMDELIEVELYVRLTYPAV-LEVKKVYLTISSQS 630
                FLE +  F          ++  R++ + ++E  +RL   +V L+ KK     +  +
Sbjct: 593  IAELFLETRVSFLDQQTVEQDSKVAVRVEIVSKIEQVIRLNDVSVHLKAKKFPPDANQTA 652

Query: 631  ETIEIPVTDDINQTITLEGSKVKRFLCQFKPNPKDVGSDLQIKCVSFVLDSERKRKIILN 690
               +  + D I+   ++E SK K        + K+   +  +      LD      I  N
Sbjct: 653  NDADCLIYDPIHLG-SVEVSKSKPLQRVVLLDLKNAKQNWIVTVTKVTLDLGNA--IRGN 709

Query: 691  FKTDDKKSESIIHPELLHFIMSPKSDYEFDCIVPLRVASVTSRECKWSIEVTNCSPALQG 750
             + D+       H E +  +       EF   + + VA  TS + + S+E  +C   L G
Sbjct: 710  IEFDENALNRNCHVENIIGL-------EF---LKIGVAK-TSVKLE-SVEKVDC---LIG 754

Query: 751  EWFPTTFTVTNNEEIAVSSTKIALSL-LSSPENPNPESVTDLSLKEGEAQLQP-LHISVG 808
            E   T  T+ N      SS    L L     E  + E+   L +++   +L+     SV 
Sbjct: 755  EVTSTELTIRNT---CKSSPIHGLQLDFKRKEQKHAEAAAVLFVEQDGTELKSEFSKSVC 811

Query: 809  NVNRSGTHTNT-FYLKTNRTATITVQIRISYIIDLPAIKKLECMKDFTCKITVIKPFEVT 867
                +G                  +Q+ +SY I    I   +        +T  +PF VT
Sbjct: 812  EQLGAGEMAKIPVMFSAQLVGDYVLQLELSYKISEDGILVTKSTM-LEVGVTAKEPFTVT 870

Query: 868  SAFVSTDFSPISKCFVDDPFIVMPQIKILSPWDLLIIDTELEVVDSFKNTDKTKPISCIR 927
            S  ++ +  P++    +   I+   I+  S   ++I   E  + D     D     S   
Sbjct: 871  STVMNMNGIPMTSILNNCDHILNASIQ--SAASIVISSVEFLMADVVTLCDTINGGSGKN 928

Query: 928  -NLEVAEKNIASDAICIQAKYNPKDNPTRVGLYNITWRRKSNLHGLCVMSSTA-LSGLPI 985
             N +V  + +   +  I+      ++ T +G  ++ WRR   +   C + S A L  +P+
Sbjct: 929  LNDKVHSEEVICYSAVIRVLVKEDESETPLGRMSVEWRRA--VPNSCPVRSVAPLCRIPV 986

Query: 986  DQCPVSVKVDY---PAVIELLTSVPLKCILKGNTNTPIRLSLVVKWTDDYIFSGYKKLSV 1042
              CP+S+       PA++     +  +  LK ++   + +S      D ++FSG +K+++
Sbjct: 987  LACPISISSHIKTNPAIVRQPIEICFE--LKSHSKEAVEISTNFDLNDVFMFSGERKVTM 1044

Query: 1043 MVPPKGQVELKYNIRPLFAGNTMPPRIT--ATVIGDNSSQDAVSEMFEKAFPETIFVVPK 1100
             V P     +   +  L AG    P+I+  +  I D + Q ++     +  P  IFV+PK
Sbjct: 1045 TVLPGATRRVTVVVMALSAGRLNFPKISLKSPQISDQTLQQSL-----RTLPAAIFVLPK 1099


>U41007-16|AAA82276.1|  288|Caenorhabditis elegans Hypothetical
           protein C33H5.16 protein.
          Length = 288

 Score = 35.5 bits (78), Expect = 0.21
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 208 KNIKQHRDHLNKTTHQYLFVRHQFKLGYLNELK---QDINTAHKHYVHAY 254
           + I++ R++  +T HQYLFV HQ  + +  E K   +++  AH  + H Y
Sbjct: 235 QKIREQRNNSIQTDHQYLFV-HQVMMNFFLEKKLFDEEVKKAHADFTHKY 283


>U55374-3|AAB36866.2|  589|Caenorhabditis elegans Immunoglobulin-like
            cell adhesionmolecule family protein 3 protein.
          Length = 589

 Score = 33.1 bits (72), Expect = 1.1
 Identities = 32/138 (23%), Positives = 61/138 (44%), Gaps = 11/138 (7%)

Query: 889  VMPQIKIL-SPWDLLIIDTELEVVDSFKNTDKTKPISCIRNLEVAE-KNIASDAI----- 941
            +M Q+KI  +P+ +   +   +VV +   T   + I C+    V++ + + +D +     
Sbjct: 24   IMAQVKITDAPYPVANAEQLNQVVWTMHGTPTKEAIYCVSEAPVSQLRFVCTDCLEKNIT 83

Query: 942  -CIQAKYNPKDNPTRVGLYNITWRR---KSNLHGLCVMSSTALSGLPIDQCPVSVKVDYP 997
              +    + +D   RVG   +T +     +N  G  +M   AL+G  +D  P +V V Y 
Sbjct: 84   DMVNVLNSAQDITRRVGFPAVTLKDIAVNTNWTGATIMCQAALNGGTVDSSPATVDVRYL 143

Query: 998  AVIELLTSVPLKCILKGN 1015
                ++ S     +L GN
Sbjct: 144  RQPHVVDSNGQSPVLIGN 161


>AL032621-5|CAA21492.2|  404|Caenorhabditis elegans Hypothetical
           protein Y45F3A.8 protein.
          Length = 404

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 4/113 (3%)

Query: 762 NEEIAVSSTKIALSLLSSPENPNPESVTDL-SLKEGEAQLQPLHISVGNVNRSGTHTNTF 820
           N   + +    A S  +S E+ NP ++ DL ++ +   +  P   +    +RS   + + 
Sbjct: 167 NTNSSFTGNATAASNQNSTESTNPSTIIDLKAILQSTGRTSPQTTTSRPRSRSPRSSES- 225

Query: 821 YLKTNRTATITVQIRISYIIDLPAIKKLECMKDFTCKITVIKPFEVTSAFVST 873
             + N T +IT+    +  +    +K+L   +D   KIT  +P  +T++   T
Sbjct: 226 --RHNETTSITLPSSFNSTVRKLTLKELMTTRDTMPKITTAEPSSLTTSLSKT 276


>AY204196-1|AAO39199.1|  412|Caenorhabditis elegans nuclear receptor
           NHR-110 protein.
          Length = 412

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 721 CIVPLRVASVTSRECKWSIEVT-------NCSPALQGEWFPTTFTVTNNEEIAVSSTKI 772
           C    R+ S++ ++C +S   T       NC P + G WF  T  +T    I +S   I
Sbjct: 34  CAAFFRIVSISKKKCHFSPRPTHKCRNNSNCKPKIDGRWFCKTCRLTRCLSIGMSPENI 92


>AC024880-3|AAF60915.3|  675|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.1 protein.
          Length = 675

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 567 MIEKEPLQVAV-DMANISSFLEIKPKFKQMKYRMDELIEVELYVRLTYPAVLEVK 620
           MI +EP    + +  ++SSF E++P  K++ +   E I     +R+T  A LEV+
Sbjct: 1   MIRQEPKAYFLYENVDLSSFSELEPACKELDFAAFEDIHASCLLRITNTADLEVR 55


>U41540-7|AAM54182.1|  930|Caenorhabditis elegans Hypothetical
           protein F35H12.2a protein.
          Length = 930

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 668 SDLQIKCVSFVLDSERKRKIILNFKTDDKKSESIIHPELLHFIMSPKSDYEFDCIVPLRV 727
           +D ++  +S   DS+RKR      K +  KS S +  +LLH    P  D E DC  PL  
Sbjct: 331 NDRKLTFISLESDSDRKRS-----KQNLGKSPSRMPTQLLH----PTGDDESDCDEPLLS 381

Query: 728 AS-VTSRECK 736
            S   S+ECK
Sbjct: 382 GSGKVSQECK 391


>U41540-6|AAM54183.1|  934|Caenorhabditis elegans Hypothetical
           protein F35H12.2b protein.
          Length = 934

 Score = 31.1 bits (67), Expect = 4.5
 Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 668 SDLQIKCVSFVLDSERKRKIILNFKTDDKKSESIIHPELLHFIMSPKSDYEFDCIVPLRV 727
           +D ++  +S   DS+RKR      K +  KS S +  +LLH    P  D E DC  PL  
Sbjct: 331 NDRKLTFISLESDSDRKRS-----KQNLGKSPSRMPTQLLH----PTGDDESDCDEPLLS 381

Query: 728 AS-VTSRECK 736
            S   S+ECK
Sbjct: 382 GSGKVSQECK 391


>Z50027-2|CAA90332.3|  460|Caenorhabditis elegans Hypothetical
           protein C39B10.2 protein.
          Length = 460

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 552 LPSSSQSKAVELWQSMIEKEPLQVAVDMANISSFLEIKPKFKQMKYRMDELI 603
           LP  S +KA++LW            ++ A I+S++    KF  M  +M  ++
Sbjct: 295 LPQVSYAKAIDLWYGACMFFVFCALLEFATINSYMRKSEKFDSMAKKMQSVV 346


>AC006777-1|ABB51174.1|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 110, isoform b protein.
          Length = 424

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 721 CIVPLRVASVTSRECKWSIEVT-------NCSPALQGEWFPTTFTVTNNEEIAVSSTKI 772
           C    R+ S++  +C +S   T       NC P + G WF  T  +T    I +S   I
Sbjct: 46  CAAFFRIVSISKSKCHFSPRPTHKCRNNSNCKPKIDGRWFCKTCRLTRCLSIGMSPENI 104


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.134    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,139,026
Number of Sequences: 27539
Number of extensions: 1232171
Number of successful extensions: 2976
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2964
Number of HSP's gapped (non-prelim): 12
length of query: 1103
length of database: 12,573,161
effective HSP length: 89
effective length of query: 1014
effective length of database: 10,122,190
effective search space: 10263900660
effective search space used: 10263900660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)