Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000186-TA|BGIBMGA000186-PA|IPR000571|Zinc finger,
CCCH-type
         (256 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    25   0.43 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   2.3  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   5.3  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   5.3  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 230 YEIHSDEELPFKCFVCREGFT 250
           Y  H+ E  PFKC +C   FT
Sbjct: 154 YRTHTGER-PFKCKICGRAFT 173


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 189 ETGFCGFGDSCKFLHD 204
           E GF  F + C FLH+
Sbjct: 793 EAGFMSFYEICDFLHE 808



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 188 KETGFCGFGDSCKFLHDRSDY 208
           KE+GF  + + C+ L + + Y
Sbjct: 363 KESGFLAYYEVCELLQNGATY 383


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/19 (36%), Positives = 14/19 (73%), Gaps = 1/19 (5%)

Query: 233 HSDEELPFKCFVCREGFTN 251
           HS E  P++C +C++ F++
Sbjct: 72  HSGER-PYRCRLCKKAFSD 89


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/19 (36%), Positives = 14/19 (73%), Gaps = 1/19 (5%)

Query: 233 HSDEELPFKCFVCREGFTN 251
           HS E  P++C +C++ F++
Sbjct: 328 HSGER-PYRCRLCKKAFSD 345


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.130    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,057
Number of Sequences: 317
Number of extensions: 2141
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 256
length of database: 114,650
effective HSP length: 55
effective length of query: 201
effective length of database: 97,215
effective search space: 19540215
effective search space used: 19540215
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)