Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000186-TA|BGIBMGA000186-PA|IPR000571|Zinc finger,
CCCH-type
(256 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 171 3e-43
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 167 5e-42
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 167 5e-42
At4g36860.2 68417.m05227 LIM domain-containing protein low simil... 40 0.002
At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ... 36 0.027
At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein ... 36 0.035
At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein ... 34 0.081
At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein ... 34 0.081
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ... 34 0.11
At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ... 34 0.11
At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein ... 33 0.14
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 33 0.19
At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein ... 33 0.19
At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein ... 33 0.19
At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein ... 33 0.19
At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein ... 33 0.19
At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ... 33 0.19
At4g34400.1 68417.m04886 transcriptional factor B3 family protei... 33 0.25
At3g53310.1 68416.m05881 transcriptional factor B3 family protei... 33 0.25
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ... 33 0.25
At1g49520.1 68414.m05550 SWIB complex BAF60b domain-containing p... 33 0.25
At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 32 0.33
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 32 0.33
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 32 0.43
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 32 0.43
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 32 0.43
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 31 0.57
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 31 0.57
At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family... 31 0.57
At2g45380.1 68415.m05645 expressed protein similar to gi2344899|... 31 0.57
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ... 31 0.76
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 31 0.76
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.76
At4g33050.2 68417.m04703 calmodulin-binding family protein conta... 31 1.0
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica... 31 1.0
At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein ... 31 1.0
At1g79970.1 68414.m09349 expressed protein 31 1.0
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 31 1.0
At1g52410.2 68414.m05915 caldesmon-related weak similarity to Ca... 31 1.0
At1g52410.1 68414.m05914 caldesmon-related weak similarity to Ca... 31 1.0
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 30 1.3
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 30 1.3
At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein ... 30 1.3
At5g14890.1 68418.m01746 NHL repeat-containing protein contains ... 30 1.8
At3g48040.1 68416.m05237 Rac-like GTP-binding protein (ARAC8) id... 30 1.8
At5g28940.1 68418.m03581 hypothetical protein 29 2.3
At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein ... 29 2.3
At3g19050.1 68416.m02420 kinesin motor protein-related contains ... 29 2.3
At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing pr... 29 2.3
At2g18340.1 68415.m02137 late embryogenesis abundant domain-cont... 29 2.3
At1g75090.1 68414.m08721 methyladenine glycosylase family protei... 29 2.3
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 29 2.3
At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2... 29 3.1
At4g35610.1 68417.m05058 zinc finger (C2H2 type) family protein ... 29 3.1
At3g54740.1 68416.m06056 expressed protein contains Pfam profile... 29 3.1
At2g34080.1 68415.m04172 cysteine proteinase, putative contains ... 29 3.1
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 29 4.0
At5g08550.1 68418.m01017 expressed protein 29 4.0
At4g38480.1 68417.m05438 transducin family protein / WD-40 repea... 29 4.0
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso... 29 4.0
At4g16563.1 68417.m02506 aspartyl protease family protein contai... 29 4.0
At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein... 29 4.0
At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger) fa... 29 4.0
At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DN... 29 4.0
At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit... 29 4.0
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 29 4.0
At5g34895.1 68418.m04113 hypothetical protein similar to At2g049... 28 5.3
At5g16500.1 68418.m01928 protein kinase family protein contains ... 28 5.3
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo... 28 5.3
At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR... 28 5.3
At3g30450.1 68416.m03852 hypothetical protein similar to At2g049... 28 5.3
At3g25910.1 68416.m03230 expressed protein 28 5.3
At2g04970.1 68415.m00518 hypothetical protein similar to At2g152... 28 5.3
At1g10720.1 68414.m01221 BSD domain-containing protein contains ... 28 5.3
At5g64030.1 68418.m08039 dehydration-responsive protein-related ... 28 7.1
At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit... 28 7.1
At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit... 28 7.1
At5g09460.1 68418.m01095 expressed protein 28 7.1
At3g59990.2 68416.m06698 methionyl aminopeptidase, putative / me... 28 7.1
At3g59990.1 68416.m06697 methionyl aminopeptidase, putative / me... 28 7.1
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 28 7.1
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 28 7.1
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 28 7.1
At3g11290.1 68416.m01373 expressed protein 28 7.1
At1g68870.1 68414.m07879 hypothetical protein 28 7.1
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 28 7.1
At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit... 28 7.1
At5g62290.1 68418.m07820 nucleotide-sensitive chloride conductan... 27 9.3
At5g17910.1 68418.m02100 expressed protein 27 9.3
At5g01400.1 68418.m00053 expressed protein contains low similari... 27 9.3
At4g21460.1 68417.m03104 expressed protein 27 9.3
At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family p... 27 9.3
At2g01070.1 68415.m00013 expressed protein similar to membrane p... 27 9.3
At1g49920.1 68414.m05598 zinc finger protein-related weak simila... 27 9.3
At1g31410.1 68414.m03847 putrescine-binding periplasmic protein-... 27 9.3
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 171 bits (417), Expect = 3e-43
Identities = 95/230 (41%), Positives = 138/230 (60%), Gaps = 26/230 (11%)
Query: 48 KRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTE 107
K+V KP+ + + GP KS + S +S+ + Q ATAT E +T+
Sbjct: 67 KKVAKPDSKLYFSSGPSKSSTTTSGAPERSVFHYDSSKEIQV---QNDSGATATLETETD 123
Query: 108 KDRDAQAIFEKA-QKINEELHGQ----ADDKIYRGINNYAQY---YKKKDTAAGNASSGL 159
++DA+AI E+ +K +E L G +D+K+Y+GI+ Y + ++++ T + + G
Sbjct: 124 FNQDARAIRERVLKKADEALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGG- 182
Query: 160 VRKGPIRAPANLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQLEREEL 219
GP+RA A++R + R+DYQPDICKDYKETG+CG+GDSCKFLHDR DYK GWQ+E+E
Sbjct: 183 -SHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWE 241
Query: 220 ETPG----------QDGDSDYEIHSDEE---LPFKCFVCREGFTNPVVTK 256
E +D D + + SDE+ LPF CF+CRE F +PVVTK
Sbjct: 242 EAEKVRKRNKAMGVEDEDDEADKDSDEDENALPFACFICREPFVDPVVTK 291
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 167 bits (407), Expect = 5e-42
Identities = 95/230 (41%), Positives = 134/230 (58%), Gaps = 29/230 (12%)
Query: 48 KRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTE 107
K+V KP+ N+ + GP E D K Q Q ATAT E +T+
Sbjct: 105 KKVAKPDSNLYFSSGPSTRTSGAPERPVFHYDSSKEIQ------VQNDSGATATLETETD 158
Query: 108 KDRDAQAIFEKA-QKINEELHGQ----ADDKIYRGINNYAQY---YKKKDTAAGNASSGL 159
++DA+AI E+ +K + L G +D+K+Y+GI+ Y + ++++ T + + G
Sbjct: 159 FNQDARAIRERVLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGG- 217
Query: 160 VRKGPIRAPANLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQLEREEL 219
GP+RA A++R + R+DYQPDICKDYKETG+CG+GDSCKFLHDR DYK GWQ+E+E
Sbjct: 218 -SHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWE 276
Query: 220 ETPG----------QDGDSDYEIHSDEE---LPFKCFVCREGFTNPVVTK 256
E +D D + + SDE+ LPF CF+CRE F +PVVTK
Sbjct: 277 EAEKVRKRNKAMGVEDDDDEADKDSDEDENALPFACFICREPFLDPVVTK 326
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 167 bits (407), Expect = 5e-42
Identities = 95/230 (41%), Positives = 134/230 (58%), Gaps = 29/230 (12%)
Query: 48 KRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTE 107
K+V KP+ N+ + GP E D K Q Q ATAT E +T+
Sbjct: 105 KKVAKPDSNLYFSSGPSTRTSGAPERPVFHYDSSKEIQ------VQNDSGATATLETETD 158
Query: 108 KDRDAQAIFEKA-QKINEELHGQ----ADDKIYRGINNYAQY---YKKKDTAAGNASSGL 159
++DA+AI E+ +K + L G +D+K+Y+GI+ Y + ++++ T + + G
Sbjct: 159 FNQDARAIRERVLKKADHALKGNKKKASDEKLYKGIHGYTDHKAGFRREQTISSEKAGG- 217
Query: 160 VRKGPIRAPANLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQLEREEL 219
GP+RA A++R + R+DYQPDICKDYKETG+CG+GDSCKFLHDR DYK GWQ+E+E
Sbjct: 218 -SHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFLHDRGDYKPGWQIEKEWE 276
Query: 220 ETPG----------QDGDSDYEIHSDEE---LPFKCFVCREGFTNPVVTK 256
E +D D + + SDE+ LPF CF+CRE F +PVVTK
Sbjct: 277 EAEKVRKRNKAMGVEDDDDEADKDSDEDENALPFACFICREPFLDPVVTK 326
>At4g36860.2 68417.m05227 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 547
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 67 KIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQKI 122
K + ED+DD DE++ R L ++ E A +++ E+ R A+A E+ +K+
Sbjct: 75 KSETEEDDDDDEDEDEEYMRAQLEAAEEEERRVAQAQIEEEEKRRAEAQLEETEKL 130
>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 386
Score = 35.9 bits (79), Expect = 0.027
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 164 PIRAPANLRATVRWDY-QPDICKDYKETGFCGFGDSCKFLHDRSD 207
P+ AP N V+ Y + +C + TG C FGD C F H +++
Sbjct: 254 PVPAPMNNGGVVKTVYWKTRLCMKFDITGQCPFGDKCHFAHGQAE 298
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 168 PANLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQLEREELETP--GQD 225
P N + T Y+ +C ++ G C G+ C F H D + +E + P GQD
Sbjct: 95 PVN-KGTANIFYKTRMCAKFR-AGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQD 152
Query: 226 GDSDYEIHSDEELP 239
+ + E + E P
Sbjct: 153 RERERERERERERP 166
>At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 252
Score = 35.5 bits (78), Expect = 0.035
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 151 AAGNASSGLVRKGPIRAPANLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRSD 207
A+ N S V GP A + W + IC ++ TG+C FG C F H S+
Sbjct: 118 ASRNRESFAVSLGPRGNVAQTLKSPNWKTR--ICNKWQTTGYCPFGSHCHFAHGPSE 172
>At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 453
Score = 34.3 bits (75), Expect = 0.081
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 184 CKDYKETGFCGFGDSCKFLHDRSDYKHGWQLEREELETPGQDGDSDYE 231
C+ + TG CG+G+SC++ H ++ G R++L P + G D E
Sbjct: 50 CQFFLRTGQCGYGNSCRYNHPLTNLPQGIIYYRDQL--PERVGQPDCE 95
Score = 31.1 bits (67), Expect = 0.76
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C ++K GFC FG +CKF H
Sbjct: 313 CGNFKAYGFCKFGANCKFDH 332
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C Y +TG C FG +CKF H
Sbjct: 135 CPYYMQTGLCRFGVACKFHH 154
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 184 CKDYKETGFCGFGDSCKFLHDR 205
C+ + TG C +GD CK+ H +
Sbjct: 267 CRFFMNTGTCKYGDDCKYSHPK 288
>At1g32360.1 68414.m03989 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 384
Score = 34.3 bits (75), Expect = 0.081
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 178 DYQPDICKDYKETGFCGFGDSCKFLHDRSD-YKHGWQLEREELETPGQDGDS 228
+++ IC ++ TG+C FG C F H ++ ++ G L EE G+DG S
Sbjct: 260 NWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFGGGLVEEE----GKDGVS 307
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 185 KDYKETGFCGFGDSCKFLHDRS 206
K Y E G C +G+SC FLHD +
Sbjct: 180 KFYTEEG-CPYGESCTFLHDEA 200
>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 310
Score = 33.9 bits (74), Expect = 0.11
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 182 DICKDYKETGFCGFGDSCKFLH 203
++C ++ETG C +GD+C+F H
Sbjct: 236 ELCNKWQETGACCYGDNCQFAH 257
>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 393
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 169 ANLRATVRWDYQPDICKDYKETGFCGFGDSCKFLH 203
A R R+ Y ++C +++ G C GD C+F H
Sbjct: 113 ARRRDPRRFQYSGEVCPEFRRGGDCSRGDDCEFAH 147
>At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 308
Score = 33.5 bits (73), Expect = 0.14
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 182 DICKDYKETGFCGFGDSCKFLH 203
++C ++ETG C +GD C+F H
Sbjct: 226 ELCNKWQETGTCPYGDHCQFAH 247
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDRS 206
+PD C Y TG CG+G C+F H R+
Sbjct: 45 EPD-CIYYLRTGVCGYGSRCRFNHPRN 70
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDR 205
QP +C+ + TG C FG SCK+ H R
Sbjct: 91 QP-VCQHFMRTGTCKFGASCKYHHPR 115
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLH 203
QP+ C+ + TG C FG SC+F H
Sbjct: 294 QPE-CQYFMRTGDCKFGTSCRFHH 316
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C + + G C FG +CKF H
Sbjct: 342 CTHFAQHGICKFGPACKFDH 361
>At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 354
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDRS 206
QP+ C+ Y +TG C FG +CKF H R+
Sbjct: 69 QPE-CEFYLKTGTCKFGVTCKFHHPRN 94
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDR 205
QP+ C+ Y +TG C FG CKF H R
Sbjct: 225 QPE-CQFYMKTGDCKFGTVCKFHHPR 249
Score = 31.5 bits (68), Expect = 0.57
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQLEREELETPGQDGDSDYEIH 233
+PD C Y TG C FG +C+F H D K R + E P + G + E +
Sbjct: 24 EPD-CAYYIRTGLCRFGSTCRFNHPH-DRKLVIATARIKGEYPERIGQPECEFY 75
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 183 ICKDYKETGFCGFGDSCKFLH 203
+C Y G C FG SCKF H
Sbjct: 273 LCVFYSRYGICKFGPSCKFDH 293
>At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 368
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDRS 206
QP+ C+ Y +TG C FG +CKF H R+
Sbjct: 90 QPE-CEFYLKTGTCKFGVTCKFHHPRN 115
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDR 205
QP+ C+ Y +TG C FG CKF H R
Sbjct: 246 QPE-CQFYMKTGDCKFGTVCKFHHPR 270
Score = 31.5 bits (68), Expect = 0.57
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQLEREELETPGQDGDSDYEIH 233
+PD C Y TG C FG +C+F H D K R + E P + G + E +
Sbjct: 45 EPD-CAYYIRTGLCRFGSTCRFNHPH-DRKLVIATARIKGEYPERIGQPECEFY 96
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 183 ICKDYKETGFCGFGDSCKFLH 203
+C Y G C FG SCKF H
Sbjct: 287 LCVFYSRYGICKFGPSCKFDH 307
>At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 375
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDRS 206
QP+ C+ Y +TG C FG +CKF H R+
Sbjct: 90 QPE-CEFYLKTGTCKFGVTCKFHHPRN 115
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDR 205
QP+ C+ Y +TG C FG CKF H R
Sbjct: 246 QPE-CQFYMKTGDCKFGTVCKFHHPR 270
Score = 31.5 bits (68), Expect = 0.57
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDRSDYKHGWQLEREELETPGQDGDSDYEIH 233
+PD C Y TG C FG +C+F H D K R + E P + G + E +
Sbjct: 45 EPD-CAYYIRTGLCRFGSTCRFNHPH-DRKLVIATARIKGEYPERIGQPECEFY 96
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 183 ICKDYKETGFCGFGDSCKFLH 203
+C Y G C FG SCKF H
Sbjct: 294 LCVFYSRYGICKFGPSCKFDH 314
>At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 397
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDRS 206
QP+ C+ Y +TG C FG +CKF H R+
Sbjct: 88 QPE-CEYYLKTGTCKFGVTCKFHHPRN 113
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDR 205
+PD C Y TG C FG +C+F H R
Sbjct: 43 EPD-CSYYIRTGLCRFGSTCRFNHPR 67
Score = 32.3 bits (70), Expect = 0.33
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDR 205
QP+ C+ Y +TG C FG CKF H R
Sbjct: 277 QPE-CQFYMKTGDCKFGTVCKFHHPR 301
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 183 ICKDYKETGFCGFGDSCKFLH 203
+C Y G C FG SCKF H
Sbjct: 325 LCVFYTRYGICKFGPSCKFDH 345
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C + TG C FG +CKF H
Sbjct: 137 CAYFLRTGHCKFGGTCKFNH 156
>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 468
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 184 CKDYKETGFCGFGDSCKFLHDR 205
C+ Y +TG C FG SCKF H R
Sbjct: 295 CQYYLKTGDCKFGTSCKFHHPR 316
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 169 ANLRATVRWD--YQPDICKDYKETGFCGFGDSCKFLHDRS 206
A +RAT ++ + C+ Y +TG C FG SCKF H ++
Sbjct: 79 ATVRATGQYPERFGEPPCQFYLKTGTCKFGASCKFHHPKN 118
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 181 PDICKDYKETGFCGFGDSCKFLHDR 205
PD C Y TG CG+G+ C++ H R
Sbjct: 49 PD-CAYYMRTGVCGYGNRCRYNHPR 72
Score = 31.5 bits (68), Expect = 0.57
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C Y + GFC FG +CKF H
Sbjct: 341 CTFYVQNGFCKFGSTCKFDH 360
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C Y +TG C FG +CKF H
Sbjct: 142 CSYYLKTGQCKFGITCKFHH 161
>At4g34400.1 68417.m04886 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 389
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 65 KSKIDVIEDNDDSNDEE----KTSQRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQ 120
KSK++V+ED+DD +E+ ++S+ T + + A T +K + + + E +
Sbjct: 155 KSKVEVVEDSDDDEEEDSVYSESSEETETDTDSEFKVAKPTIPKSQKKGKKKEQVVESSD 214
Query: 121 KINEELHGQADDKI 134
+E D I
Sbjct: 215 DEEDEEEDSDSDYI 228
Score = 28.3 bits (60), Expect = 5.3
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 49 RVNKPN-PNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQ---RENATATYEL 104
+V KP P Q G K K V+E +DD DEE+ S + Q EN+ + +
Sbjct: 190 KVAKPTIPKSQKKG---KKKEQVVESSDDEEDEEEDSDSDYIETFGQLDIEENSISEEDS 246
Query: 105 DTEKDRD--AQAIFEKAQKINE 124
D++ A A F K + N+
Sbjct: 247 SYAPDKEDTATASFVKPKVANK 268
>At3g53310.1 68416.m05881 transcriptional factor B3 family protein
contains Pfam profile PF02362: B3 DNA binding domain
Length = 286
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 64 KKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRDAQAIFE 117
+K DV+ED+DD +++E + S + E + + Y +D E DA A+FE
Sbjct: 128 EKDSTDVVEDDDDEDEDE--DEDDDGSFDEDEEISQSLYPIDEETATDA-AVFE 178
>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDR 205
+PD C Y TG CG+G C+F H R
Sbjct: 32 EPD-CIYYLRTGVCGYGSRCRFNHPR 56
Score = 32.3 bits (70), Expect = 0.33
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 183 ICKDYKETGFCGFGDSCKFLHDR 205
+C+ + TG C FG SCK+ H R
Sbjct: 80 VCQHFMRTGTCKFGASCKYHHPR 102
Score = 29.1 bits (62), Expect = 3.1
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLH 203
QP+ C+ + TG C FG SC++ H
Sbjct: 285 QPE-CQYFMRTGDCKFGSSCRYHH 307
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 184 CKDYKETGFCGFGDSCKFLHDRS 206
C + + G C FG +CKF H S
Sbjct: 334 CTHFAQHGICKFGPACKFDHSMS 356
>At1g49520.1 68414.m05550 SWIB complex BAF60b domain-containing
protein contains Pfam profile PF02201: BAF60b domain of
the SWIB complex
Length = 372
Score = 32.7 bits (71), Expect = 0.25
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 62 GPKKSKIDVIEDNDDSNDEEKTSQR 86
G +K K++ EDND+SN+E+ TS R
Sbjct: 343 GKQKMKMETDEDNDESNEEKATSSR 367
>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 32.3 bits (70), Expect = 0.33
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C+ Y TG CG+G SC++ H
Sbjct: 53 CQFYLRTGLCGYGSSCRYNH 72
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 184 CKDYKETGFCGFGDSCKFLHDRSDYKH 210
C Y TG C FG +CKF H + D H
Sbjct: 141 CPYYLRTGTCRFGVACKFHHPQPDNGH 167
Score = 31.5 bits (68), Expect = 0.57
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 184 CKDYKETGFCGFGDSCKFLHDRSDY 208
C +++ GFC FG +CKF H Y
Sbjct: 313 CGNFRSYGFCKFGPNCKFDHPMLPY 337
Score = 31.1 bits (67), Expect = 0.76
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLH 203
QP+ C+ + TG C +GD CK+ H
Sbjct: 264 QPE-CRFFMNTGTCKYGDDCKYSH 286
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDR 205
QPD C+ + +TG C +G +CK+ H +
Sbjct: 93 QPD-CEYFLKTGACKYGPTCKYHHPK 117
>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 32.3 bits (70), Expect = 0.33
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C+ Y TG CG+G SC++ H
Sbjct: 53 CQFYLRTGLCGYGSSCRYNH 72
Score = 32.3 bits (70), Expect = 0.33
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 184 CKDYKETGFCGFGDSCKFLHDRSDYKH 210
C Y TG C FG +CKF H + D H
Sbjct: 141 CPYYLRTGTCRFGVACKFHHPQPDNGH 167
Score = 31.5 bits (68), Expect = 0.57
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 184 CKDYKETGFCGFGDSCKFLHDRSDY 208
C +++ GFC FG +CKF H Y
Sbjct: 313 CGNFRSYGFCKFGPNCKFDHPMLPY 337
Score = 31.1 bits (67), Expect = 0.76
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLH 203
QP+ C+ + TG C +GD CK+ H
Sbjct: 264 QPE-CRFFMNTGTCKYGDDCKYSH 286
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDR 205
QPD C+ + +TG C +G +CK+ H +
Sbjct: 93 QPD-CEYFLKTGACKYGPTCKYHHPK 117
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 31.9 bits (69), Expect = 0.43
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C Y TG C FG SCKF H
Sbjct: 116 CSFYMRTGSCKFGSSCKFNH 135
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
CK Y TG C +G++C+F H
Sbjct: 164 CKYYFRTGGCKYGETCRFNH 183
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 182 DICKDYKETGFCGFGDSCKFLH 203
+IC Y G C FG +C+F H
Sbjct: 396 NICTYYSRYGICKFGPACRFDH 417
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 162 KGPIRAPANLRATVRWDYQPDICKDYKETGFCGFGDSCKFLH 203
+G +R P N A + C+D++E GFC GD C H
Sbjct: 186 QGSLRPPLN--APLNMGIPRQRCRDFEERGFCLRGDMCPMEH 225
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 162 KGPIRAPANLRATVRWDYQPDICKDYKETGFCGFGDSCKFLH 203
+G +R P N A + C+D++E GFC GD C H
Sbjct: 186 QGSLRPPLN--APLNMGIPRQRCRDFEERGFCLRGDMCPMEH 225
>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 31.5 bits (68), Expect = 0.57
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
CK Y TG C +G+SC+F H
Sbjct: 154 CKYYFRTGGCKYGESCRFSH 173
Score = 31.1 bits (67), Expect = 0.76
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 184 CKDYKETGFCGFGDSCKFLHDRSDYKHGWQLEREELETPGQD 225
C Y TG C +G SCKF H + Q+ RE + +D
Sbjct: 107 CSFYMRTGSCKYGSSCKFNH---PVRRKLQIGRERVRERDED 145
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 180 QPD--ICKDYKETGFCGFGDSCKFLHDRSDYKHGWQLEREELETPGQDGDSDYEIH 233
+PD +C Y G C FG +C+F H + E G +G+ D H
Sbjct: 380 RPDQSMCTHYSRYGICKFGPACRFDHSIPPTFSPSSSQTVEARQVGANGNEDDSWH 435
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C Y G C FG CKF H
Sbjct: 200 CPFYMRNGSCKFGSDCKFNH 219
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 31.5 bits (68), Expect = 0.57
Identities = 33/142 (23%), Positives = 56/142 (39%), Gaps = 15/142 (10%)
Query: 72 EDNDDS--NDEEKTSQRTTLSVQQQRENATATYELDTEKDRDAQA--IFEKAQKINEELH 127
+DNDD D+E + V Q + T L + K + + +A+KI++
Sbjct: 240 DDNDDMLVEDDETVERHEEYQVSQ---DGTGNSHLTSHKSFGVEVMNVDNQAKKIDQTFS 296
Query: 128 GQADDKIYRGINNYAQYYKKKDTAAGNASSGLVRKGPIRAPANLRATVRWDYQPD----- 182
+A K+ G + + KD A + +++ R ++ P
Sbjct: 297 NEA--KMDPGTSIKKRSAPSKDAKARKRAKARIKRAQERIALGVKKLKLKPVAPKPKPIK 354
Query: 183 ICKDYKETGFCGFGDSCKFLHD 204
C+ Y + G C GD CKF HD
Sbjct: 355 YCRHYLK-GRCHEGDKCKFSHD 375
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C ++ GFC GDSC F H
Sbjct: 410 CNNFITKGFCYRGDSCLFSH 429
>At5g02850.1 68418.m00228 hydroxyproline-rich glycoprotein family
protein
Length = 426
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 63 PKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATA 100
PK+SKI E++D+ ND E +S TT+S Q + ++ A
Sbjct: 213 PKRSKI---EEDDEDNDNESSSSSTTVSSQLKLKDILA 247
>At2g45380.1 68415.m05645 expressed protein similar to
gi2344899|AC002388
Length = 491
Score = 31.5 bits (68), Expect = 0.57
Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 50 VNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENAT------ATYE 103
VNKP+ + KI + D N E T R + + T A Y
Sbjct: 304 VNKPSVEHPEDDSDAERKIQNVNQRSDFNRREGTQSRAN-TFRHHISKVTYGGIHGAYYT 362
Query: 104 LDTEKDRDAQAIFEKAQKINEELHGQADDKIYRGINNYAQYYKKKDTAAGNASS 157
+ +D + + K ++ G+A +I RGIN+ +K ++G S
Sbjct: 363 STRTRRKDGDGMVVEESKEADKTTGEATHRISRGINDKGHSVTRKLNSSGGVES 416
>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 381
Score = 31.1 bits (67), Expect = 0.76
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 169 ANLRATVRWDYQPDICKDYKETGFCGFGDSCKFLH 203
A R R+ Y ++C ++ G C GD C F H
Sbjct: 91 ARRRDPRRFHYTGEVCPEFSRHGDCSRGDECGFAH 125
>At4g14760.1 68417.m02271 M protein repeat-containing protein
contains Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 66 SKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQK 121
+K+D D+ +++ E +T +RT L +Q ++E Y+L K + AQK
Sbjct: 112 NKLDGTSDSHEADSEVETLKRTLLELQTEKEALNLQYQLILSKVSRFEKELNDAQK 167
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.1 bits (67), Expect = 0.76
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 176 RWDYQPD-----ICKDYKETGFCGFGDSCKFLHD-RSDYKHGWQLEREELETPGQD 225
+WD+ + +C+ ++ G C GDSCKF HD + GW E + QD
Sbjct: 173 KWDHDKNREGRGVCRAFQR-GECTRGDSCKFSHDEKRAATTGWGHEEDRSSKWDQD 227
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 183 ICKDYKETGFCGFGDSCKFLHDRSDYKH-GWQLERE 217
+C+ ++ G C GDSCKF HD + GW E +
Sbjct: 135 VCRAFQR-GECTRGDSCKFSHDEKRAANTGWGHEED 169
>At4g33050.2 68417.m04703 calmodulin-binding family protein contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 526
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/60 (20%), Positives = 35/60 (58%)
Query: 64 KKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQKIN 123
++ +D+ S +EE +S ++T +++R+ + E+ +EK+ A+ +F+ ++++
Sbjct: 395 EEHNVDLTNVKRCSVNEEYSSFKSTADEEEERKEVSEEVEIPSEKEERARPVFDPVKRLS 454
>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
to floral homeotic protein HUA1 [Arabidopsis thaliana]
gi|16797661|gb|AAK01470
Length = 524
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 183 ICKDYKETGFCGFGDSCKFLHDR 205
+C Y +TG C FG SCKF H +
Sbjct: 273 MCTFYMKTGKCKFGLSCKFHHPK 295
Score = 30.3 bits (65), Expect = 1.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C Y +TG C FG+ CKF H
Sbjct: 426 CDYYMKTGECKFGERCKFHH 445
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C Y +T C FG+SC+F H
Sbjct: 180 CTHYMQTRTCKFGESCRFDH 199
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 180 QPDICKDYKETGFCGFGDSCKFLHDRSD 207
+PD C Y +T C +G CKF H R +
Sbjct: 228 EPD-CPYYIKTQRCKYGSKCKFNHPREE 254
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C Y +TG C +G +CKF H
Sbjct: 479 CPYYMKTGTCKYGATCKFDH 498
>At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein /
GYF domain-containing protein contains Pfam domains
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF02213: GYF domain
Length = 659
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 183 ICKDYKETGFCGFGDSCKFLHD 204
+CK ++E G C G SC +LH+
Sbjct: 638 VCKFFRENGHCRKGASCNYLHN 659
>At1g79970.1 68414.m09349 expressed protein
Length = 240
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 65 KSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKD 109
K I++ E+ DDS EK +S +++ ENA A E+D
Sbjct: 186 KEDIEIHEEGDDSFSTEKPQNHREVSAEKESENAGAEESCYEEED 230
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 30.7 bits (66), Expect = 1.0
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 48 KRVNKPNPNIQSTGGPKKSKIDVI-EDNDDSNDEEKTSQRTTLSVQQQRENATATYELDT 106
K N+ + G K KI+V +DND S E+ TS + ++ + T T D
Sbjct: 1665 KEGNRAGKKSRDDGFGKVRKIEVQRKDNDQSFVEKDTSGKAKENLNDEEPTKTETKATDN 1724
Query: 107 EKDRDAQAIFEKAQKINEELHGQADDK-IYRGINNYAQYYKKKDTAAGNASSGLVRK 162
E R I E+ E L Q K + ++ + + ++T + SS ++++
Sbjct: 1725 E-SRKIHQIKEQGTSEQERLKEQGRIKELVEDRTHFCREKENRETEYEDGSSKMIQE 1780
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 64 KKSKIDVIEDNDDSNDEEKTS---QRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQ 120
K+ K V+ + +++ ++K + ++Q+EN A EL+TE+D F+K +
Sbjct: 1046 KREKRKVLVEEEETYPKDKHTGGEDHNDHKEEEQKENVIAKAELNTEEDS-----FKKVE 1100
Query: 121 KINEELHGQ 129
+I ++ HG+
Sbjct: 1101 EIEKQDHGE 1109
>At1g52410.2 68414.m05915 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 759
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 72 EDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRD 111
+D ++ NDEE +++R +L + +RE AT EL+ K D
Sbjct: 166 DDVNEGNDEEHSAKRQSLLEEIEREFEAATKELEQLKVND 205
>At1g52410.1 68414.m05914 caldesmon-related weak similarity to
Caldesmon (CDM) (Swiss-Prot:P12957) [Gallus gallus]
Length = 755
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 72 EDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRD 111
+D ++ NDEE +++R +L + +RE AT EL+ K D
Sbjct: 166 DDVNEGNDEEHSAKRQSLLEEIEREFEAATKELEQLKVND 205
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 158 GLVRKGPIRAPANLRATVRWDYQPDICKDYKETGFCGFGDSCKFLHDRS 206
GL RK P + +W +CK +K+ G C G+ C+FLH S
Sbjct: 74 GLARKNAACGPMRSSSLRKW-----VCKYWKD-GKCKRGEQCQFLHSWS 116
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 178 DYQPDICKDYKETGFCGFGDSCKFLHDRSDYK 209
+Y+ IC Y + G C +GD C F H S+ +
Sbjct: 205 NYKTKICDRYSK-GNCTYGDRCHFAHGESELR 235
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 184 CKDYKETGFCGFGDSCKFLH 203
C + T C FGD+C FLH
Sbjct: 42 CTKFFSTSGCPFGDNCHFLH 61
>At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 371
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 183 ICKDYKETGFCGFGDSCKFLHDRSDYKHGWQLEREELETPGQDGDSD 229
+C+ +K G C G CKF HD + + G +++ +T +DGD D
Sbjct: 93 LCEFFK-AGQCQKGFKCKFSHDLNIQRKGEKIDIYS-DTRDEDGDMD 137
>At5g14890.1 68418.m01746 NHL repeat-containing protein contains
Pfam profile PF01436: NHL repeat
Length = 754
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 46 PTKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELD 105
P N P +++ G + +D D +++K + T S + RE +
Sbjct: 384 PRSGTNPDKPYLRAQGTNQNRSY--YQDYDQYQNQQKRNVNDTASFEDNREKNEIVFGAV 441
Query: 106 TEKDRDAQAIFEKAQKINEELHGQ 129
E+D +A+ KA NE ++ Q
Sbjct: 442 QEQDGRREAMVIKAVDFNEAINDQ 465
>At3g48040.1 68416.m05237 Rac-like GTP-binding protein (ARAC8)
identical to rac GTP binding protein Arac8 GI:3702966
from [Arabidopsis thaliana]
Length = 208
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 66 SKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATY--ELDTEKDRDAQAIFEKAQKI 122
+K+D+ ED +D S TT ++ R++ ATY E ++ ++ +A+F+ A K+
Sbjct: 120 TKMDLREDRHYLSDHPGLSPVTTSQGEELRKHIGATYYIECSSKTQQNVKAVFDAAIKV 178
>At5g28940.1 68418.m03581 hypothetical protein
Length = 485
Score = 29.5 bits (63), Expect = 2.3
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 68 IDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRD-----AQAIFEKAQKI 122
I +IED DDS E ++ TLS + + T T E+ D ++ EK +
Sbjct: 394 IVMIEDADDS--ERASNHSHTLSNIEAMKLLTRTSEVSEMLVSDTATPKSRVKLEKLDEK 451
Query: 123 NEELHGQADDKIYRGINN 140
N+E+ G +D+ G+NN
Sbjct: 452 NDEMVGNEEDEKKSGVNN 469
>At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 356
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 169 ANLRATVRWDYQPDICKDYKETGFCGFGDSCKFLH 203
A R ++ Y C D+++ G C GDSC+F H
Sbjct: 110 ARRRDPRKYHYSGTACPDFRKGG-CKKGDSCEFAH 143
>At3g19050.1 68416.m02420 kinesin motor protein-related contains Pfam
profile: PF00225 Kinesin motor domain; contains
non-consensus splice site (GC) at intron 12
Length = 2722
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 80 EEKTSQRTTLSVQ-QQRENATATYELDTEKDRDAQAIFEKAQKINEELHGQADD 132
E+ S L V+ Q+ + T E+DTEK R Q EK N+++ +A+D
Sbjct: 2098 EDAVSHAQMLEVRLQESKEITRNLEVDTEKARKCQ---EKLSAENKDIRAEAED 2148
>At3g15790.1 68416.m01999 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 254
Score = 29.5 bits (63), Expect = 2.3
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 51 NKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDR 110
+K + TG +K+ +DV + +++DE+K S+ T + EN T EK
Sbjct: 192 SKETDKEKDTGSIEKNSVDVEKKTVEASDEKKNSEAET---RNHEENGLTTEAEGKEKTA 248
Query: 111 DAQA 114
+ +A
Sbjct: 249 EGEA 252
>At2g18340.1 68415.m02137 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein low similarity to SP|P20075 Embryonic protein
DC-8 {Daucus carota}; contains Pfam profile PF02987:
Late embryogenesis abundant protein
Length = 456
Score = 29.5 bits (63), Expect = 2.3
Identities = 30/148 (20%), Positives = 60/148 (40%), Gaps = 8/148 (5%)
Query: 67 KIDVIEDN--DDSNDEEKTS-QRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQKIN 123
K +++D D + D + + ++ ++ + A ++ +K A +KA+
Sbjct: 255 KAGIVKDMAYDKAGDAKDVAYEKAGIAKDMAYDKAGNAKDMAYDKVGSAYGSAQKAKDSG 314
Query: 124 EELHGQADDKIYRGINN-----YAQYYKKKDTAAGNASSGLVRKGPIRAPANLRATVRWD 178
E G+A D Y+ N Y + KD A A G + G + A ++ ++
Sbjct: 315 YEKAGEAKDYAYKKAGNAKDIAYEKAQDAKDFAYDKAGYGYDKAGDVIRMATDKSGEAYE 374
Query: 179 YQPDICKDYKETGFCGFGDSCKFLHDRS 206
+ K K+T DS ++ D+S
Sbjct: 375 GAKEKSKSAKDTAGEAMDDSIDYMKDKS 402
>At1g75090.1 68414.m08721 methyladenine glycosylase family protein
similar to SP|P05100 DNA-3-methyladenine glycosylase I
(EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
constitutive) {Escherichia coli}; contains Pfam profile
PF03352: Methyladenine glycosylase
Length = 329
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/87 (21%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 44 VLPTKRVNKP--NPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATAT 101
V T+ KP NP + + KK + DDS+ +S+R++++ + T +
Sbjct: 30 VTKTEMTKKPQLNPRVTKSPATKKPDSNFSVSTDDSSSSSSSSERSSVNTTNSGKVTTPS 89
Query: 102 YELDTEKDRDAQAIFEKAQKINEELHG 128
EK + A + I+ ++ G
Sbjct: 90 KRNGVEKLNNVVASVAVVEDISPKIPG 116
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 64 KKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQKIN 123
KK++ + +ED DEE +R VQ+ +E E ++E DA KA K
Sbjct: 261 KKTREEELEDEQKKLDEEVEKRRR--RVQEWQELKRKKEEAESESKGDADGNEPKAGKA- 317
Query: 124 EELHGQADDK 133
L G++DD+
Sbjct: 318 WTLEGESDDE 327
>At5g14440.1 68418.m01690 surfeit locus 2 protein-related / SURF2
protein-related contains weak hit to Pfam profile
PF05477: Surfeit locus protein 2 (SURF2)
Length = 291
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 45 LPTKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTS--QRTTLSVQQQRENATATY 102
L K K + +I + GG +K + +ED D ++K + ++ SV++++
Sbjct: 112 LEEKEREKESGSIPAEGGETPAKENGVEDEDKKKKKKKNNKKKKNKKSVEKKKNGEDVAD 171
Query: 103 ELDTEKDRDAQAIFE 117
E++ E D + E
Sbjct: 172 EIEHENDEAVEEELE 186
>At4g35610.1 68417.m05058 zinc finger (C2H2 type) family protein
contains Pfam domain PF00096: Zinc finger, C2H2 type
Length = 271
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 59 STGGPKKSKIDVIEDNDDSNDEEKTSQRTTL 89
S P+K+K+DV E+ + +DE+ + + T +
Sbjct: 2 SNPNPEKTKVDVTEEEKEESDEQWSDEETNM 32
>At3g54740.1 68416.m06056 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 390
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 77 SNDEEKTSQRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQKINEELHGQADDKIYR 136
++D+EK S L ++++ TYE++ K R +A+ I++++ G D
Sbjct: 88 THDQEKLSVLENLLYEKEQAIEALTYEVEAYKHRLLSYGVSEAE-IHDQILGFGRDSSTV 146
Query: 137 GINNYAQYYKKKDTAAGNASSGLVRKGPIRAPANLRATVRWDY 179
G + Y Y + + SG I + + RW Y
Sbjct: 147 GFDVYPCEYTSLECSVDENPSGPDGNFEIEEKVMVGQSPRWPY 189
>At2g34080.1 68415.m04172 cysteine proteinase, putative contains
similarity to cysteine protease SPCP1 GI:13491750 from
[Ipomoea batatas]
Length = 345
Score = 29.1 bits (62), Expect = 3.1
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
Query: 103 ELDTEKDRDAQAIFEKAQKINEELHGQADDKIYRGINNYAQYYKKKDTAAGNASSGLVRK 162
EL+ RD +F+K K E + + + G+N +A + ++ A GL
Sbjct: 53 ELEKNMRRD---VFKKNLKFIENFNKKGNKSYKLGVNEFADWTNEEFLAIHTGLKGLTEV 109
Query: 163 GPIRAPANLRATVRWDYQPDI--CKDYKETG 191
P + A ++ W+ + KD++ G
Sbjct: 110 SPSKVVAKTISSQTWNVSDMVVESKDWRAEG 140
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/68 (20%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 48 KRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTE 107
K++ P + S G K+ K+ + D+D+ E+K S++ + E + +E
Sbjct: 17 KKMALDTPELDSKKGKKEQKLK-LSDSDEEESEKKKSKKKDKKRKASEEEDEVKSDSSSE 75
Query: 108 KDRDAQAI 115
K + ++ +
Sbjct: 76 KKKSSKKV 83
>At5g08550.1 68418.m01017 expressed protein
Length = 908
Score = 28.7 bits (61), Expect = 4.0
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 5/125 (4%)
Query: 46 PTKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELD 105
PT ++ P S PKK ++ DD +EE + R T+ + R+ ++ L
Sbjct: 31 PTSTLSSSKPKTLSASAPKKK---LLSFADDEEEEEDGAPRVTIKPKNGRDRVKSSSRLG 87
Query: 106 TEKDRDAQAIFEKAQKINEELHGQADDKIYRGINNYAQYYK--KKDTAAGNASSGLVRKG 163
+ ++ + + + QA + + + ++ NA +V KG
Sbjct: 88 VSGSSHRHSSTKERRPASSNVLPQAGSYSKEALLELQKNTRTLPYSRSSANAEPKVVLKG 147
Query: 164 PIRAP 168
I+ P
Sbjct: 148 LIKPP 152
>At4g38480.1 68417.m05438 transducin family protein / WD-40 repeat
family protein contains contains Pfam PF00400: WD
domain, G-beta repeat (7 copies, 3 weak);similar to gene
PC326 protein - mouse, PIR2:S37694
Length = 471
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 61 GGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRD 111
G P+ ++D+DDS+DE ++ EN E+ + D D
Sbjct: 400 GNPRWFDGYYVDDDDDSDDESSEESSDDDDSSEEEENGEVDVEITKDDDND 450
>At4g37820.1 68417.m05351 expressed protein Kaposi's
sarcoma-associated herpes-like virus ORF73gene, Kaposi's
sarcoma-associated herpesvirus, U52064
Length = 532
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 47 TKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDT 106
T++ + + ++T KK I+ +E D SN ++ Q+T + +RE+ T +T
Sbjct: 410 TEKKSSESQRKENTNSEKK--IEQVESTDSSNTQKGDEQKTD---ESKRESGNDTSNKET 464
Query: 107 EKDRDAQAIFEKAQKIN 123
E D ++ EK ++ N
Sbjct: 465 EDD-SSKTESEKKEENN 480
>At4g16563.1 68417.m02506 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 499
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 49 RVNKPNPNIQSTGGPKKSK-IDVIEDNDDSNDEEK 82
RV +P+P I KK K + +D+DD +DE+K
Sbjct: 265 RVRRPSPLILGRFVDKKEKRVGTTDDHDDGDDEKK 299
>At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein
low similarity to SP|P25583 Karyogamy protein KAR4
{Saccharomyces cerevisiae},
(N6-adenosine)-methyltransferase [Mus musculus]
GI:10179948; contains Pfam profile PF05063: MT-A70
(S-adenosylmethionine-binding subunit of human mRNA:m6A
methyl-transferase (MTase))
Length = 775
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/66 (25%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 47 TKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQ--RENATATYEL 104
++R K + +++++ +KSK ++D+D + +KTS + V ++ R N + T +
Sbjct: 129 SRRDLKSDRSLKTSSRDEKSKSRGVKDDDRGSPLKKTSGKDGSEVVREVGRSNRSKTPDA 188
Query: 105 DTEKDR 110
D EK++
Sbjct: 189 DYEKEK 194
>At4g01023.1 68417.m00138 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 236
Score = 28.7 bits (61), Expect = 4.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 235 DEELPFKCFVCREGFTNPVVT 255
D+ LP C +C+ F +PVVT
Sbjct: 79 DDALPLACSICQNPFLDPVVT 99
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 58 QSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATAT-YELDTEKDRDA 112
+ T KK +D +ED +DSN+E ++ ++++ T + L E+D DA
Sbjct: 27 EMTKNLKKRDLDAVED-EDSNNESSRLEKLEKKIKKETARKLETDFVLTGEEDDDA 81
>At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DNA
topoisomerase IV subunit A (GI:26454107) [Mycoplasma
penetrans]
Length = 772
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/66 (25%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 59 STGGPKKSKIDVIEDNDDSNDEEKTSQRTTL--SVQQQRENATATY-ELDTEKDRDAQAI 115
+T G K+ KI+ DD +D+E+ ++R ++ +++++ E T ++ +L+ D A+
Sbjct: 275 ATSGLKELKINAHTVKDDVDDKEQDAKRQSMLDAIEREFEAVTESFKQLEDIADNKAEGD 334
Query: 116 FEKAQK 121
E A++
Sbjct: 335 DESAKR 340
>At2g03190.1 68415.m00272 E3 ubiquitin ligase SCF complex subunit
SKP1/ASK1 (At16), putative E3 ubiquitin ligase; similar
to Skp1 homolog Skp1a GI:3068807 from [Arabidopsis
thaliana]
Length = 170
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 64 KKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQKIN 123
KK +D ++D+DDS E TS+ +V ++ +N T++ + K+ D + + + +N
Sbjct: 60 KKHVLDDVDDSDDST--EATSE----NVNEEAKNELRTWDAEFMKEFDMETVMKLILAVN 113
>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
weak similarity to Nucleoporin NUP42 (Nuclear pore
protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
cerevisiae]; contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 28.7 bits (61), Expect = 4.0
Identities = 8/22 (36%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
Query: 182 DICKDYKETGFCGFGDSCKFLH 203
++C++++ G C +G++C+FLH
Sbjct: 4 ELCRNFQR-GSCRYGENCRFLH 24
>At5g34895.1 68418.m04113 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At2g14140, At3g30450, At4g03990,
At3g47270, At2g02200
Length = 490
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/80 (18%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 46 PTKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELD 105
PT++ ++P ++T PK+ ++ +++D++ D+E + + +N TA E +
Sbjct: 285 PTEKESQPQKE-ETTEVPKEENVEEHDEHDETEDQE-----AYVILSDDEDNGTAPTEKE 338
Query: 106 TEKDRDAQAIFEKAQKINEE 125
++ ++ + K ++E
Sbjct: 339 SQPQKEETTEVPRETKKDDE 358
>At5g16500.1 68418.m01928 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 636
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 62 GPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQ 120
G K S ED ++ +++ + + S ++Q + TAT + D E D +++ E+ Q
Sbjct: 397 GNKSSSSSDSEDEEEEKEQKAEKEEESTSKKRQEQEETAT-DSDDESDSNSEKDQEEEQ 454
>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
ribosomal protein L14 - Human,PIR3:JC5954
Length = 134
Score = 28.3 bits (60), Expect = 5.3
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 64 KKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENAT--ATYELDTEKDRDAQAIFEKAQK 121
KK+ I+ +E D N EK+S L VQ++R N +++ K + A + ++ K
Sbjct: 68 KKALIEAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKKAGVVRQELAK 127
Query: 122 INEEL 126
+ +E+
Sbjct: 128 LKKEI 132
>At3g44480.1 68416.m04781 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1194
Score = 28.3 bits (60), Expect = 5.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 197 DSCKFLHDRSDYKHGWQL 214
++C+F+ D S +KH W L
Sbjct: 36 ENCRFIQDESSWKHPWSL 53
>At3g30450.1 68416.m03852 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At2g14140, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 800
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/80 (18%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 46 PTKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELD 105
PT++ ++P ++T PK+ ++ +++D++ D+E + + +N TA E +
Sbjct: 595 PTEKESQPQKE-ETTEVPKEENVEEHDEHDETEDQE-----AYVILSDDEDNGTAPTEKE 648
Query: 106 TEKDRDAQAIFEKAQKINEE 125
++ ++ + K ++E
Sbjct: 649 SQPQKEETTEVPRETKKDDE 668
>At3g25910.1 68416.m03230 expressed protein
Length = 372
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 62 GPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDR 110
G S+I V++ +D EE+ + V ++ E T E D EK++
Sbjct: 122 GEAASEITVVDLSDGERGEEEVEEEEEEVVVEEEEEGIVTTEEDQEKNK 170
>At2g04970.1 68415.m00518 hypothetical protein similar to At2g15200,
At1g32830, At2g14140, At3g30450, At4g03990, At5g34895,
At3g47270, At2g02200
Length = 808
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/80 (18%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 46 PTKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELD 105
PT++ ++P ++T PK+ ++ +++D++ D+E + + +N TA E +
Sbjct: 603 PTEKESQPQKE-ETTEVPKEENVEEHDEHDETEDQE-----AYVILSDDEDNGTAPTEKE 656
Query: 106 TEKDRDAQAIFEKAQKINEE 125
++ ++ + K ++E
Sbjct: 657 SQPQKEETTEVPRETKKDDE 676
>At1g10720.1 68414.m01221 BSD domain-containing protein contains
Pfam profile PF03909: BSD domain
Length = 429
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/73 (21%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 69 DVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQKINEELHG 128
D +D++D+N++EKT + +T ++ + + L E++ A+ + + ++ L
Sbjct: 17 DAADDDEDNNNDEKTPKAST----ERHDFSRNAVRLSPEEEAQARGVKDDLTELGHTLTR 72
Query: 129 QADDKIYRGINNY 141
Q +RG+ N+
Sbjct: 73 Q-----FRGVANF 80
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 42 QVVLPTKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATAT 101
+ V+ K + K + N S K DV++D+DD EE+ S + + E+ +
Sbjct: 345 KAVIEEKPIQKNDKNSASLSQTSK---DVVDDDDDDWPEEEDSANSWAPMFTVNEDDVSF 401
Query: 102 YELDTEKDRDAQAIFEK 118
+L+ + D + A+ K
Sbjct: 402 SDLEGDDDISSLALKSK 418
>At5g64030.1 68418.m08039 dehydration-responsive protein-related
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 829
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 50 VNKPNPNIQSTGG---PKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDT 106
V PN + + G PK+ + +DN + EEKT + T S + + E + D
Sbjct: 81 VETPNEDKKGDGDASLPKEDESSSKQDNQEEKKEEKTKEEFTPSSETKSETEGGEDQKDD 140
Query: 107 EKDRD 111
K +
Sbjct: 141 SKSEN 145
>At5g42820.2 68418.m05216 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 184 CKDYKETGFCGFGDSCKFLHDRSDYKHGWQL----EREELETPGQD 225
C Y + G C GD C LH+R L +R ++ TPG D
Sbjct: 18 CPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD 63
>At5g42820.1 68418.m05215 U2 snRNP auxiliary factor small subunit,
putative strong similarity to U2 snRNP auxiliary factor,
small subunit [Oryza sativa] GI:3850816
Length = 283
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 184 CKDYKETGFCGFGDSCKFLHDRSDYKHGWQL----EREELETPGQD 225
C Y + G C GD C LH+R L +R ++ TPG D
Sbjct: 18 CPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD 63
>At5g09460.1 68418.m01095 expressed protein
Length = 326
Score = 27.9 bits (59), Expect = 7.1
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Query: 72 EDNDD--SNDEEKTSQRTTLSVQQQRENATATYELD-TEKDRDAQAIFEKAQKI 122
+DNDD S+DE ++ + +V+QQ N T T ELD TE D + K QK+
Sbjct: 178 DDNDDWESDDEVMSTGHSPFTVEQQACNIT-TEELDETESTVDGPLL--KRQKL 228
>At3g59990.2 68416.m06698 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 67 KIDVIEDNDDSNDEEKTSQRTTLSVQQQREN-ATATYELDTEKDRDA---QAIFEKAQKI 122
K+++ ED + ND E+ S+ T + +++++N + EL + D + +F +
Sbjct: 37 KLEIAEDGQEENDGEEGSKAETSTKKKKKKNKSKKKKELPQQTDPPSIPVVELFPSGEFP 96
Query: 123 NEELHGQADDKIYR 136
E+ DD ++R
Sbjct: 97 EGEIQEYKDDNLWR 110
>At3g59990.1 68416.m06697 methionyl aminopeptidase, putative /
methionine aminopeptidase, putative / peptidase M,
putative similar to Methionine aminopeptidase 2 (EC
3.4.11.18) from {Rattus norvegicus} SP|P38062, {Homo
sapiens} SP|P50579; contains Pfam profile PF00557:
metallopeptidase family M24; supporting cDNA
gi|11344921|gb|AF300880.1|AF300880
Length = 439
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 67 KIDVIEDNDDSNDEEKTSQRTTLSVQQQREN-ATATYELDTEKDRDA---QAIFEKAQKI 122
K+++ ED + ND E+ S+ T + +++++N + EL + D + +F +
Sbjct: 37 KLEIAEDGQEENDGEEGSKAETSTKKKKKKNKSKKKKELPQQTDPPSIPVVELFPSGEFP 96
Query: 123 NEELHGQADDKIYR 136
E+ DD ++R
Sbjct: 97 EGEIQEYKDDNLWR 110
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Query: 183 ICKDYKETGFCGFGDSCKFLH 203
ICK Y E+G+C G SC F H
Sbjct: 1210 ICKFY-ESGYCKRGASCSFWH 1229
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085
from [Synechocystis sp. PCC 6803]
Length = 876
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 42 QVVLPTKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSV 91
Q + P R P N S S +V+ ++ D ND+ KT+Q L++
Sbjct: 14 QFLSPENRQRLPR-NYPSISCQNNSATNVVHEDGDDNDKAKTNQVNLLAI 62
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 27.9 bits (59), Expect = 7.1
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 178 DYQPDICKDYKETGFCGFGDSCKFLHDRSDYK 209
+++ IC+ + + G C FGD C F H ++ +
Sbjct: 213 NFKTKICERFSK-GNCTFGDRCHFAHGEAELR 243
>At3g11290.1 68416.m01373 expressed protein
Length = 460
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 54 NPNIQSTGGPKKSKIDVI--EDNDDSNDEEKTSQRTTLSVQQQR 95
N + + T G K+ +I EDND++ DEE T + S Q +
Sbjct: 122 NLDDEGTSGSKRKRIAKHRDEDNDNTGDEEDTQSASNFSSPQSK 165
>At1g68870.1 68414.m07879 hypothetical protein
Length = 147
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/62 (19%), Positives = 30/62 (48%)
Query: 72 EDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQKINEELHGQAD 131
ED+DD +D++ ++ + S+ + +T++ A A A+++N + +
Sbjct: 58 EDDDDDDDDDSSNNESDDSMTSDASSWPSTHQPPRSTKNHAAAKNSNAKQVNNQTENRVR 117
Query: 132 DK 133
D+
Sbjct: 118 DR 119
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 27.9 bits (59), Expect = 7.1
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 53 PNPNIQSTGGP--KKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDR 110
P + +T G KKSK D +DDS+DEE T +N + + ++ +
Sbjct: 104 PKKAVAATNGTVAKKSKDDSSSSDDDSSDEEVA---VTKKPAAAAKNGSVKAKKESSSED 160
Query: 111 DAQAIFEKAQK 121
D+ + E A+K
Sbjct: 161 DSSSEDEPAKK 171
>At1g27650.1 68414.m03379 U2 snRNP auxiliary factor small subunit,
putative Strong similarity to gb|Y18349 U2 snRNP
auxiliary factor, small subunit from Oryza sativa. ESTs
gb|AA586295 and gb|AA597332 come from this gene
Length = 296
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 184 CKDYKETGFCGFGDSCKFLHDRSDYKHGWQL----EREELETPGQD 225
C Y + G C GD C LH+R L +R ++ TPG D
Sbjct: 18 CPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVD 63
>At5g62290.1 68418.m07820 nucleotide-sensitive chloride conductance
regulator (ICln) family protein contains PF03517:
Nucleotide-sensitive chloride conductance regulator
(ICln)
Length = 229
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 66 SKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQKINEE 125
++I+V ED DD +D E T +++ R + + +L+T D + + + EE
Sbjct: 96 TQIEVEEDEDDESDSESTEVLDLSKIREMRLVPSDSTQLETLFDVFCECAELNPEPVQEE 155
>At5g17910.1 68418.m02100 expressed protein
Length = 1342
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 43 VVLPTKRVNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRT 87
VV+PTK N + +K+K + N D+N + S+ T
Sbjct: 1284 VVIPTKAAGPSNVTLSDEVVTEKAKAETTASNTDANVQSPESKET 1328
>At5g01400.1 68418.m00053 expressed protein contains low similarity to
symplekin SP:Q92797 from [Homo sapiens]
Length = 1467
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/57 (17%), Positives = 27/57 (47%)
Query: 53 PNPNIQSTGGPKKSKIDVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKD 109
P P + ++ + D+D+ D+ TS+ +++ +E++ E + E++
Sbjct: 1411 PEPTSHTRTSDPQASSQTLRDDDEKIDDTATSENEVTEIEKSKESSEEEEEEEEEEE 1467
>At4g21460.1 68417.m03104 expressed protein
Length = 415
Score = 27.5 bits (58), Expect = 9.3
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 16/107 (14%)
Query: 105 DTEKDRDAQAIFEKAQKINEELHGQADDKIYRGINNYAQYYKKKD--TAAGNASSGLVRK 162
D KD D ++ FE+A +EEL + +Y A+ +KK+ N ++R+
Sbjct: 128 DDVKDEDFESDFEEAHSTDEEL-----EDLYNSPEYVAEKMRKKEFFNMDDNKWDHMIRE 182
Query: 163 G--------PIRAPANLRATVRWD-YQPDICKDYKETGFCGFGDSCK 200
G + L ++WD PD K E F GD C+
Sbjct: 183 GIQHGCLTDTKQCEEILEDMLKWDQLLPDDLKKKVEAKFNELGDMCE 229
>At3g07880.1 68416.m00963 Rho GDP-dissociation inhibitor family
protein similar to SP|P52565 Rho GDP-dissociation
inhibitor 1 (Rho GDI 1) (Rho-GDI alpha) {Homo sapiens};
contains Pfam profile PF02115: RHO protein GDP
dissociation inhibitor
Length = 240
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Query: 72 EDNDDSNDEEKT-SQRTTLSVQQQRENATATYELDTEKDRDAQAIFEKAQKINEELHGQA 130
+D DD N +T + LS Q + AT E E+D D++ I E L
Sbjct: 22 KDGDDENSSSRTRADDDALSRQMSESSLCATEE---EEDDDSKLQLGPQYTIKEHLEKDK 78
Query: 131 DDKIYR 136
DD+ R
Sbjct: 79 DDESLR 84
>At2g01070.1 68415.m00013 expressed protein similar to membrane
protein PTM1 precursor isolog GB:AAB65479
Length = 496
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 69 DVIEDNDDSNDEEKTSQRTTLSVQQQRENATATYELDTEKDR 110
DV E+N+++ Q +S+ +Q +NA + E D E+D+
Sbjct: 453 DVDEENEEAQSLTGGKQDGDISLVKQEKNAESDREEDVEEDK 494
>At1g49920.1 68414.m05598 zinc finger protein-related weak
similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
mays] GI:1857256; contains Pfam profiles PF03108: MuDR
family transposase, PF04434: SWIM zinc finger
Length = 785
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 50 VNKPNPNIQSTGGPKKSKIDVIEDNDDSNDEEK 82
+ P P + G K ++ D +E+++D +D+E+
Sbjct: 729 IEPPPPKVSGKGKEKDTEDDHLEEDEDGDDDEE 761
>At1g31410.1 68414.m03847 putrescine-binding periplasmic
protein-related similar to Chain A, Putrescine Receptor
(Potf) (GI:3891734) [Escherichia coli]; similar to Chain
C, Putrescine Receptor (Potf) (GI:3891736) [Escherichia
coli]; similar to Putrescine-binding periplasmic protein
precursor. (Swiss-Prot:P31133) [Escherichia coli]
Length = 524
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 95 RENATATYELDTEKDRDAQAIFEKAQKINEELHGQADDKIYRGINNYAQYYKKKDTAAGN 154
++ A +T D D+ F +K+ E + G D Y+G+++ + Y +++ A
Sbjct: 169 KKGAASTAAADMISIGDSWLSFAIKEKLIEPMKGIEDQDWYKGLSDKWKIYLRRNYAGEK 228
Query: 155 ASSGLVRKGPIR 166
A G P R
Sbjct: 229 APDGETWAVPYR 240
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.130 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,064,504
Number of Sequences: 28952
Number of extensions: 263984
Number of successful extensions: 1185
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1026
Number of HSP's gapped (non-prelim): 194
length of query: 256
length of database: 12,070,560
effective HSP length: 80
effective length of query: 176
effective length of database: 9,754,400
effective search space: 1716774400
effective search space used: 1716774400
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 58 (27.5 bits)
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