GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000185-TA|BGIBMGA000185-PA|IPR002557|Chitin binding
Peritrophin-A
         (629 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    41   0.003
U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase prote...    36   0.086
AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical...    35   0.15 
AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical ...    35   0.20 
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    34   0.26 
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p...    31   1.9  

>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical protein
            H02I12.1 protein.
          Length = 1319

 Score = 40.7 bits (91), Expect = 0.003
 Identities = 17/33 (51%), Positives = 19/33 (57%)

Query: 234  CNKFYYCVFGDKVERKCAPGTYFNYKIQVCDHP 266
            C  FY CV+G KV   C  GT FN  + VCD P
Sbjct: 1258 CEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDWP 1290



 Score = 34.7 bits (76), Expect = 0.20
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 550  AHDTDCDKFWRCEGKEAVLVTCSEGLHFNPKKGSCDF 586
            A   +C+ F+RC     V++TC  G  FNP    CD+
Sbjct: 1253 ADANNCEVFYRCVWGRKVVMTCPSGTVFNPLLSVCDW 1289



 Score = 34.3 bits (75), Expect = 0.26
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 32   CPEKGHKLLPHEYDCTLFYYCEYGQKWSTPRSCAPGTEFSAALQVCVHPAQADCNLPGRP 91
            C E G   +    +C +FY C +G+K     +C  GT F+  L VC  P+ A  +  G+ 
Sbjct: 1245 CSEHG-SFIADANNCEVFYRCVWGRK--VVMTCPSGTVFNPLLSVCDWPS-AVPSCSGQA 1300

Query: 92   TDS 94
            +DS
Sbjct: 1301 SDS 1303



 Score = 32.7 bits (71), Expect = 0.80
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 534 NNPSDKCKTECNILPWAHDTD-C-DKFWRCEGKEAVLVTCSEGLHFNPKKGSCDFICYAG 591
           N   D    +CN L   +  D C D F+ C         C  G  FN  + SCDF C   
Sbjct: 183 NEQPDSIDFDCNGLEDGNYADGCNDVFYSCSNNMVFQRYCPPGTVFNINQQSCDFQCTTD 242

Query: 592 CVRKTVQVTT 601
               TV  +T
Sbjct: 243 DPTTTVSYST 252



 Score = 32.7 bits (71), Expect = 0.80
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 352  DCNRFYYCVHGEKVERRCSGDLHFNPVLQV 381
            +C  FY CV G KV   C     FNP+L V
Sbjct: 1257 NCEVFYRCVWGRKVVMTCPSGTVFNPLLSV 1286



 Score = 32.7 bits (71), Expect = 0.80
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 441  DCNRFYYCVHGEKVERRCSGDLHFNPVLQV 470
            +C  FY CV G KV   C     FNP+L V
Sbjct: 1257 NCEVFYRCVWGRKVVMTCPSGTVFNPLLSV 1286



 Score = 32.3 bits (70), Expect = 1.1
 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 234 CNKFYYCVFGDKV-ERKCAPGTYFNYKIQVCDHPWNVD 270
           CN  +Y    + V +R C PGT FN   Q CD     D
Sbjct: 205 CNDVFYSCSNNMVFQRYCPPGTVFNINQQSCDFQCTTD 242



 Score = 31.1 bits (67), Expect = 2.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 322  DCNRFYYCVHGEKVERQCSGDLHFNPVL 349
            +C  FY CV G KV   C     FNP+L
Sbjct: 1257 NCEVFYRCVWGRKVVMTCPSGTVFNPLL 1284


>U42835-2|AAA83586.1|  617|Caenorhabditis elegans Chitinase protein
           1 protein.
          Length = 617

 Score = 35.9 bits (79), Expect = 0.086
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)

Query: 29  SDLCPEKGHKLLPHEYDCTLFYYCEYGQKWSTPRSCAPGTEFSAALQVCVHPAQADCNL 87
           +++C  K     P+  +C LF  C   + +S   SC  G ++SA+L+ C     + C++
Sbjct: 478 TNVCSGKSDGFYPNSNNCGLFVLCLSSKSYSM--SCPSGLQYSASLKYCTTSTASGCSV 534



 Score = 30.3 bits (65), Expect = 4.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 233 ECNKFYYCVFGDKVERKCAPGTYFNYKIQVCDHPWNVDCA 272
           +C KF  CV G     +C  G  F+    +CD P    CA
Sbjct: 577 DCLKFIRCVNGISYNFECPNGLSFHADTMMCDRPDPSKCA 616


>AC024809-10|AAF59547.1|  272|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.1 protein.
          Length = 272

 Score = 35.1 bits (77), Expect = 0.15
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 561 CEGKEAVLVTCSEGLHFNPKKGSCDFICYAGCVR 594
           C+ K+ V   C + ++  PK  SCD++CY  C +
Sbjct: 122 CQDKDGVNGFCPDHINPEPKAVSCDYVCYGYCTK 155


>AF003135-8|AAK18984.1|  235|Caenorhabditis elegans Hypothetical
           protein W03F11.1 protein.
          Length = 235

 Score = 34.7 bits (76), Expect = 0.20
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 554 DCDKFWRCEGKEAVLVTCSEGLHFNPKKGSC 584
           D +KFW+CEG   ++VTC     ++   G C
Sbjct: 31  DSNKFWKCEGGRWIVVTCQINYFYDATTGFC 61



 Score = 32.3 bits (70), Expect = 1.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 234 CNKFYYCVFGDKVERKCAPGTYFNYKIQVCDH 265
           C  FY C  G   +R C  GT ++     CDH
Sbjct: 172 CKNFYQCASGLWTQRSCGEGTIWDQHKLTCDH 203



 Score = 31.5 bits (68), Expect = 1.9
 Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 32  CPEK-GHK-LLPHEYDCTLFYYCEYGQKWSTPRSCAPGTEFSAALQVCVHPAQADCNLPG 89
           C E  GH    P  Y+C  FY C  G  W T RSC  GT +      C H  +  C  P 
Sbjct: 156 CKESAGHDGYKPDVYNCKNFYQCASG-LW-TQRSCGEGTIWDQHKLTCDH-NRGQCR-PT 211

Query: 90  RPT 92
            PT
Sbjct: 212 SPT 214


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 34.3 bits (75), Expect = 0.26
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 235 NKFYYCVFGDKVERKCAPGTYFNYKIQVCDHPWNVD 270
           + F  C  G  +   C  G  F+ K Q+CD+ WNVD
Sbjct: 253 SSFSACTNGIPIVMFCPDGLMFSEKNQMCDYEWNVD 288



 Score = 33.5 bits (73), Expect = 0.46
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 219 CPADFHIHKLLPHEEC-NKFYYCVFGDKVERKCAPGTYFNYKIQVCDHPWNV-DCA 272
           C +D +I K     EC N F+ C  G    R C     FN  I  CD P NV DC+
Sbjct: 179 CESDGNISK----SECSNVFFSCSEGIAHRRNCPANLVFNPAISSCDWPKNVMDCS 230


>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
           protein C39D10.7 protein.
          Length = 1185

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 558 FWRCEGKEAVLVTCSEGLHFNPKKGSCDF 586
           F+ C   + V  TC   L FNP  G CD+
Sbjct: 591 FYICANGQVVATTCPANLIFNPYVGECDY 619



 Score = 29.5 bits (63), Expect = 7.5
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 234 CNKFYY-CVFGDKVERKCAPGTYFNYKIQVCDHPWNVD 270
           C++ Y  C+ G  +   CAPG ++N K  +C +   VD
Sbjct: 902 CSQDYVQCMQGRSLISSCAPGLFYNEKNGMCAYKHTVD 939



 Score = 29.1 bits (62), Expect = 9.9
 Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 237 FYYCVFGDKVERKCAPGTYFNYKIQVCDHPWNV-DC 271
           FY C  G  V   C     FN  +  CD+  NV DC
Sbjct: 591 FYICANGQVVATTCPANLIFNPYVGECDYSTNVRDC 626


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.324    0.140    0.480 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,003,714
Number of Sequences: 27539
Number of extensions: 463026
Number of successful extensions: 946
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 877
Number of HSP's gapped (non-prelim): 68
length of query: 629
length of database: 12,573,161
effective HSP length: 86
effective length of query: 543
effective length of database: 10,204,807
effective search space: 5541210201
effective search space used: 5541210201
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)