GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000185-TA|BGIBMGA000185-PA|IPR002557|Chitin binding
Peritrophin-A
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01930.1 68417.m00257 DC1 domain-containing protein contains ...    31   1.7  
At2g46760.1 68415.m05834 FAD-binding domain-containing protein s...    31   1.7  
At2g30100.1 68415.m03663 ubiquitin family protein low similarity...    31   3.1  
At1g61610.1 68414.m06942 S-locus lectin protein kinase family pr...    31   3.1  
At2g46750.1 68415.m05833 FAD-binding domain-containing protein l...    29   7.0  

>At4g01930.1 68417.m00257 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 652

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 8/53 (15%)

Query: 221 ADFHIHKLLPHEECNKFYYCVFGDKVERKCAPGTY-FNYKIQVCDHPWNVDCA 272
           ++ H HKL  +++ N   Y   GDK    C   +Y F+YK Q CD  ++VDCA
Sbjct: 118 SETHHHKLNLYKKPN---YIDCGDK----CGKLSYEFSYKCQECDLAFHVDCA 163


>At2g46760.1 68415.m05834 FAD-binding domain-containing protein
           strong similarity to At1g32300, At2g46740, At2g46750,
           At5g56490; contains PF01565: FAD binding domain
          Length = 603

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 568 LVTCSEGLHFNPKKGSCDFICYAGCVRKTVQVTTRPNGISIFVPL 612
           L  CSE  H  P KG   + C  G V K  +V TR + IS+   L
Sbjct: 560 LCVCSEDAHCAPTKG---YFCRPGKVYKEARVCTRADDISVIQSL 601


>At2g30100.1 68415.m03663 ubiquitin family protein low similarity to
           SP|Q9UQ13 Leucine-rich repeat protein SHOC-2
           (Ras-binding protein Sur-8) {Homo sapiens}; contains
           Pfam profiles PF00240: Ubiquitin family, PF01535: PPR
           repeat, PF00560: Leucine Rich Repeat
          Length = 897

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 20  DELTRR-HEPSDLCPEKGHKLLPHEYDCTLFYYCEYGQ-KWST 60
           +EL R   EPSD+  E  H+L   E    L Y+ + G+  W T
Sbjct: 85  EELERMTREPSDILEEMNHRLSSRELQLMLVYFAQEGRDSWCT 127


>At1g61610.1 68414.m06942 S-locus lectin protein kinase family
           protein similar to KI domain interacting kinase 1 [Zea
           mays] gi|2735017|gb|AAB93834; contains S-locus
           glycoprotein family domain, Pfam:PF00954
          Length = 842

 Score = 30.7 bits (66), Expect = 3.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)

Query: 545 NILPWAHDTDCDKFWRCEGKEAVLVTCSEGLHFNPKKGSC 584
           N+L W   T+C+K+ RC G  +V   C +   F+  K SC
Sbjct: 286 NLLQWKPSTECEKYNRC-GNYSV---CDDSKEFDSGKCSC 321


>At2g46750.1 68415.m05833 FAD-binding domain-containing protein low
           similarity to SP|P58710 L-gulonolactone oxidase (EC
           1.1.3.8) {Mus musculus}; contains Pfam profile PF01565:
           FAD binding domain
          Length = 591

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)

Query: 568 LVTCSEGLHFNPKKGSCDFICYAGCVRKTVQVTTRPNGI 606
           L  CS+  H  P KG   ++C  G V K  +V TR +GI
Sbjct: 552 LCICSKDAHCAPAKG---YLCRPGKVYKEARVCTRVDGI 587


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.140    0.480 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,018,152
Number of Sequences: 28952
Number of extensions: 405185
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 5
length of query: 629
length of database: 12,070,560
effective HSP length: 85
effective length of query: 544
effective length of database: 9,609,640
effective search space: 5227644160
effective search space used: 5227644160
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 62 (29.1 bits)