GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000184-TA|BGIBMGA000184-PA|IPR010300|Cysteine
dioxygenase type I
         (182 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy...    28   0.94 
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    28   0.94 
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    27   2.2  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   2.2  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   5.0  
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo...    25   6.6  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    25   6.6  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   6.6  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    25   8.7  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   8.7  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    25   8.7  
SPBC1347.04 |tim54||TIM22 inner membrane protein import complex ...    25   8.7  

>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 54  NTGDQNCDNQTVMSTDYNDSCQRHNDSCQGDSHMNSGEEDEDYYDLKEIGRTRLEVNDVC 113
           N+ D++C N+TV S+      QR       + H  S  E  D    + + R R+  +  C
Sbjct: 232 NSSDESCSNKTVASS------QRRGTPGSNNVHTASNNETPDMKRRRFLERNRIAASK-C 284

Query: 114 YINDALGLHRMENPSHV 130
                L    +E  +H+
Sbjct: 285 RQKKKLWTQNLEKTAHI 301


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 27.9 bits (59), Expect = 0.94
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 60  CDNQTVMSTDYNDSCQRHNDSCQGDSHMNSGEEDEDYYDLKEIGRTRLE-VNDVCYINDA 118
           C+   + ST  + +  R  +   GD H  + +  E +Y L ++G      ++D+C+    
Sbjct: 252 CEKFALGSTAQDGAYNRLGNLWIGDFHSETIQSLESHYKLNQVGEKEYSTISDLCFSKGN 311

Query: 119 LGLH 122
           L L+
Sbjct: 312 LFLY 315


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 72  DSCQRHNDSCQGDSHMNSGEEDEDYYDLKEIGRTRLEVNDVCYI---NDALGLHRMENPS 128
           +S   + D+ Q DS  +  EE+ED  +  E+G  +     V +I   N  +GL   + P+
Sbjct: 17  ESESANGDTKQDDSKKSQVEEEEDGIEESELGEEKDNKTIVLHIGSQNLRIGLASNKTPT 76

Query: 129 HVDGAVSLHLYCP 141
            V   ++  +  P
Sbjct: 77  TVPMVIARKMRAP 89


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 61  DNQTVMSTDY-NDSCQRHNDSCQGDSHMNSGEEDED 95
           +N++ +  DY ++S +R  D+ + D H++  EE++D
Sbjct: 930 ENRSSVKEDYVSESTERTPDASEIDEHISEHEENDD 965


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 20  INKATRRFITF--SLHRYDWPDDVQPEVLRTI 49
           I  A   F+ +  SL +Y W DDV P   R +
Sbjct: 117 IRNARWNFVDYALSLRKYGWTDDVVPPYCRKV 148


>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
           Swi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 4/70 (5%)

Query: 34  RYDWPDDVQPEVLRTIKENANTGDQNCDNQTVMSTDYNDSCQRH----NDSCQGDSHMNS 89
           +Y   +++ P +   IK+     D      T+  + Y +    H    N+ C  +     
Sbjct: 249 KYPEKEEIYPTLSPRIKKPRKVFDAVVIPVTIKPSIYTEPSLPHHIDWNNGCSEEFDFEP 308

Query: 90  GEEDEDYYDL 99
             EDED+ DL
Sbjct: 309 SREDEDFPDL 318


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
           subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 69  DYNDSCQRHNDSCQGDSHMNSGEEDEDYYDL 99
           D N + +R  + C    H+    ED+D YD+
Sbjct: 627 DNNPNSERRGELCIRKEHIQQLIEDKDRYDI 657


>SPCC74.09 |mug24||RNA-binding protein, rrm
          type|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 50 KENANTG---DQNCDNQTVMSTDYNDSCQRHNDSCQGDSHMNSGEEDE 94
          K+ AN G   D +C  Q   ST   +S    NDS   +S +NS + +E
Sbjct: 22 KDQANNGHFVDSDCCFQETGSTGTANSICTLNDSEDDNSSLNSVDNNE 69


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 90  GEEDEDYYDLKEIGRTRLEVNDVCYI 115
           GEEDED +    IG  RL   ++ ++
Sbjct: 44  GEEDEDGFHNSGIGSARLRRKNISFV 69


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 84  DSHMNSGEEDEDYYDLKEIGRTRLEVNDV 112
           D   N GE D D Y++++I   R+  N +
Sbjct: 9   DIDSNEGETDADVYEVEDILADRVNKNGI 37


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1526

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 90  GEEDEDYYDLKEIGRTRLEVNDVCYINDALGLHRMENPSHVD 131
           G +D++ +DL  I    L + ++    D  G+ R+ NP  +D
Sbjct: 325 GFDDKENFDLFNILSIILHMGNIDVGADRSGIARLLNPDEID 366


>SPBC1347.04 |tim54||TIM22 inner membrane protein import complex
           subunit Tim54|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 34  RYDWPDDVQPEVLRTIKENANTGDQNCDNQTVMSTDYNDSCQRHNDSCQGDSHMNSGEED 93
           RY + DD+    L T K  AN  ++  + +     D  D  +  ND+ + D  ++  E D
Sbjct: 162 RYGFSDDIMKRKLETEKLEANNKEEKEEKE---GKDDKDDKEDSNDT-KNDKKISKNEVD 217


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 908,343
Number of Sequences: 5004
Number of extensions: 39501
Number of successful extensions: 104
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 14
length of query: 182
length of database: 2,362,478
effective HSP length: 69
effective length of query: 113
effective length of database: 2,017,202
effective search space: 227943826
effective search space used: 227943826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)