Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000184-TA|BGIBMGA000184-PA|IPR010300|Cysteine
dioxygenase type I
(182 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999 33 0.18
08_01_0207 - 1647168-1647251,1647583-1647726,1648176-1648287,164... 32 0.31
02_05_0472 + 29314486-29315040,29315170-29315319,29317439-293177... 29 2.2
05_02_0065 - 6276439-6276462,6276716-6276781,6277035-6277100,627... 29 2.9
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874... 28 3.8
07_03_0632 - 20112297-20116562 28 5.1
06_03_0433 - 20718726-20719895 28 5.1
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381... 27 6.7
06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458 27 8.9
>08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999
Length = 698
Score = 32.7 bits (71), Expect = 0.18
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 113 CYINDALGLHRMENPSHVDGAVSLHLYCPPFDSC 146
C ++ LHR ++P H+ +SL +CPP D+C
Sbjct: 404 CNLHHLCILHRQDDPDHLP--MSLESWCPPSDNC 435
>08_01_0207 -
1647168-1647251,1647583-1647726,1648176-1648287,
1648392-1648573,1648649-1648780,1648900-1649856,
1649949-1650734
Length = 798
Score = 31.9 bits (69), Expect = 0.31
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 63 QTVMSTDYNDSCQRHNDSCQGDSHMNSGEEDEDYYDLKE 101
+ + DYND H D C GD+ ++ D + + E
Sbjct: 323 RAMTDADYNDEIACHVDDCDGDARLDQNSSDHKKFSIAE 361
>02_05_0472 +
29314486-29315040,29315170-29315319,29317439-29317741,
29317823-29317933,29318622-29318732,29318760-29318828
Length = 432
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 49 IKENANTGDQNCDNQTVMSTDYNDSCQRHNDSCQGDSHMNSG 90
+K N G +N+T +S N N+SC G++H SG
Sbjct: 175 VKGNKEVGSDMEENETSVSPKNNMDQLVLNNSCNGNTHYRSG 216
>05_02_0065 -
6276439-6276462,6276716-6276781,6277035-6277100,
6277384-6277449,6277698-6277745,6278233-6278292,
6278418-6278483,6278569-6278652,6278736-6278801,
6278878-6279036,6279106-6279222,6279305-6279397,
6279697-6279900,6280013-6280161,6280234-6280492
Length = 508
Score = 28.7 bits (61), Expect = 2.9
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 22 KATRRFITFSLHRYDWPDDVQPEVLRTIKENANTGDQN--CDNQTVMSTDYNDSCQRHND 79
++ RR I S Y + + E K+ A +Q C + + D ND N+
Sbjct: 3 RSRRRCIVQSHEEYLSEEHIAEE--NAPKQLATPSEQETICSDVQEGNEDTNDDVGEANE 60
Query: 80 SCQGDSHMNSGEEDEDYYDLKEI 102
D+ MN+GE +E+ D EI
Sbjct: 61 DTDDDASMNAGEGNEESDDDVEI 83
>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
26887942-26888055,26888132-26888228,26889115-26889235,
26889306-26889390,26889494-26889643,26889871-26889987,
26890123-26890221,26890439-26890495,26890581-26890664,
26890759-26890828,26891015-26891169,26891557-26892095,
26892327-26892393,26892436-26892984,26893574-26893768,
26894485-26894569,26895822-26896441,26897154-26897486,
26897552-26897616,26897868-26897955,26898250-26898331,
26898720-26898796,26899152-26899256,26899496-26899630,
26900199-26900888,26901474-26902261,26902990-26904673
Length = 2825
Score = 28.3 bits (60), Expect = 3.8
Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 6/102 (5%)
Query: 16 VLLTINKATRRFITFSLHRYDWPDDVQPEVLRTIKENANTGDQNCDNQ-TVMSTDYNDSC 74
++L N++ +R TF+++ + VL + + + D + ++ T ++SC
Sbjct: 2705 IILIWNESEKRLSTFTVNGIP----IGTSVLTPFSGRVSCIEISVDGKFALIGTCLSNSC 2760
Query: 75 QRHNDSCQGDSHMNSGEEDEDYYDLKEIGRTRLEVNDVCYIN 116
R S D ++ D+D +L E + + V VC+I+
Sbjct: 2761 NRDGFSAIDDYELDKPNGDDDLPELNET-KPSVHVPSVCFID 2801
>07_03_0632 - 20112297-20116562
Length = 1421
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/86 (20%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 94 EDYYDLK---EIGRTRLEVNDVCYINDALGLHRMENPSHVDGAVSLHLYCPPFDSCRVFD 150
+D Y+ + E G T +E+ D+ YI +L + ++ ++ + A+ +L + +C
Sbjct: 802 QDLYEYRVKAEDGHTLIELKDMRYIQGSLCISDLQRVANREEAIQANLGRKEYVTCLALK 861
Query: 151 ARTGRPTQVKVTFWSMYGKKIKRVRR 176
+ ++ K +++YGK++ + R
Sbjct: 862 WDRNQSSRGK---YNLYGKELSQFDR 884
>06_03_0433 - 20718726-20719895
Length = 389
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 48 TIKENANTGDQNCDNQTVMSTDYNDSCQRHNDSCQGDSHMNSGEED 93
T+ E NT + D + +TD + + + H S G++ NS +ED
Sbjct: 66 TVFEKDNTDSHDDD---IRNTDRSKAGEGHGSSADGNTEANSNDED 108
>03_05_0124 + 21034963-21035181,21035618-21037466,21037485-21038194,
21038426-21038470,21038557-21038745
Length = 1003
Score = 27.5 bits (58), Expect = 6.7
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 78 NDSCQGDSHMNSGEEDEDYYD-LKEIGRTR-LEVNDVCYINDAL 119
+D+ + D + + +ED+D+YD + E+G++ +ND NDA+
Sbjct: 960 SDNSEDDVEVFNEDEDDDFYDEMLEVGQSSGTAINDDDGSNDAV 1003
>06_03_0772 + 24483314-24486781,24487148-24487240,24488366-24488458
Length = 1217
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 95 DYYDLKEIGRTRLEVNDVCYINDALGLHRMENPSHVDGAVSLHLYC 140
+++ KE G E+ ++ I L + +EN H AV HL C
Sbjct: 690 EFHVKKESGHRLGELKEMNNIRGRLSVRFLENVEHQQQAVDAHLDC 735
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.136 0.424
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,554,546
Number of Sequences: 37544
Number of extensions: 234328
Number of successful extensions: 520
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 9
length of query: 182
length of database: 14,793,348
effective HSP length: 78
effective length of query: 104
effective length of database: 11,864,916
effective search space: 1233951264
effective search space used: 1233951264
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)
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