Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000183-TA|BGIBMGA000183-PA|IPR010300|Cysteine
dioxygenase type I
         (81 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25411| Best HMM Match : CDO_I (HMM E-Value=8.6e-06)                 53   4e-08
SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)                 27   1.6  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        27   2.1  
SB_13431| Best HMM Match : Seryl_tRNA_N (HMM E-Value=2.3)              27   2.8  
SB_53228| Best HMM Match : CITED (HMM E-Value=2.5)                     26   4.9  
SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)                      26   4.9  
SB_22873| Best HMM Match : EGF_CA (HMM E-Value=1.2e-14)                26   4.9  
SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)                     25   6.4  
SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)        25   8.5  
SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.5  
SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)                 25   8.5  
SB_3155| Best HMM Match : C1_4 (HMM E-Value=0.16)                      25   8.5  

>SB_25411| Best HMM Match : CDO_I (HMM E-Value=8.6e-06)
          Length = 229

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 21/46 (45%), Positives = 30/46 (65%)

Query: 36  LERLIEELHGIFSRSHVNVQDVQKLMAGYKSDPKDWRKYAKFDRFR 81
           L+ LI ELH +F    V++  V+ LM  Y+S+  DW+KYA +D FR
Sbjct: 158 LDELIRELHEVFESDRVDIDQVKTLMESYRSNQDDWQKYANYDPFR 203


>SB_35375| Best HMM Match : RVT_1 (HMM E-Value=0.00074)
          Length = 996

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 28  KVNREIAGLERLIEELHGIFSRSHVNVQD-VQKLMAGYKSDPKDWRKYAKFD 78
           K   ++ G  +LI ++  I ++ H++VQ+    +++ Y+  P    K   ++
Sbjct: 782 KAQGQVEGFNKLINKIATIANQEHIDVQEATNDMLSAYRDTPHPATKKTPYE 833


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 20  ILPIEKPLK-VNREIAGLERLIEELHGIFSRSHVNVQDVQKLMAGYKSDPK 69
           I+ +EK LK  N EI G+E  I EL     R H ++ D +K     +++ K
Sbjct: 452 IIVLEKSLKDKNDEIFGIEGKIAELEAKNDRLHDDLMDGKKRFGELEAELK 502


>SB_13431| Best HMM Match : Seryl_tRNA_N (HMM E-Value=2.3)
          Length = 743

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 10  LKVSQCTDMEILPIEKPLKVNREIAGLERL 39
           LKVS C  ++ +P +K   +NR  A L RL
Sbjct: 641 LKVSSCPKLQRIPSQKGSFLNRSKATLNRL 670


>SB_53228| Best HMM Match : CITED (HMM E-Value=2.5)
          Length = 417

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 33  IAGLERLIEELHGIFSRSHVNVQDVQKLMAGYKSDPKDWRKYAK 76
           I GL  L+  L G+++R        Q+  AG +   + WR Y++
Sbjct: 265 IIGLAGLLVSLIGLYTRPSELPIRTQRPTAGLRPQGRRWRPYSR 308


>SB_26376| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1018

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 27  LKVNREIAGLERLIEELHGIFSRSHVNVQDVQKLMAG 63
           + +NR +   E  IE+L  +       V DV++L  G
Sbjct: 150 ININRRLGATETAIEKLTSLLDNMMAEVNDVKELANG 186


>SB_24403| Best HMM Match : BRF1 (HMM E-Value=1.2)
          Length = 623

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 24  EKPLKVNREIAGLERLIEELHGIFSRSHVNVQDVQKLMAGYKSDPKDWRKYAK 76
           E  L+ + E+   E+LIEEL          +  +++L A      ++  KY K
Sbjct: 335 EDELEDDNELQAKEQLIEELRQELRNEEAKLMLLKRLQAAQNDTSRNTSKYQK 387


>SB_22873| Best HMM Match : EGF_CA (HMM E-Value=1.2e-14)
          Length = 434

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 47  FSRSHVNVQDVQKLMAGYKSDPKDW-RKYAKFDRFR 81
           ++ S   VQD   +  G K+D  +W ++  +F+RFR
Sbjct: 91  YNHSEHLVQDKDFVHLGIKTDQDEWPKRRRRFERFR 126


>SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)
          Length = 317

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 15  CTDMEILPIEKPLKVNREIAGLERLIEELHGI--FSRSHVNVQDVQKLMAGYKSDPKDW 71
           CT ++ LPIE  LK++ ++  + +LI  +     FS  H     + K+ A    D K W
Sbjct: 98  CTIVDALPIEDVLKLSSKV--VAKLINTIASTAEFSYPHARAL-IAKVKAEIGDDVKTW 153


>SB_55733| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00036)
          Length = 1211

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 10  LKVSQCTDMEILPIEKPLKVNREIAGLERLIEEL 43
           ++VS+ TD     I+K LK+ RE + L   I EL
Sbjct: 411 VQVSKLTDQLEKGIDKYLKLEREASNLREEIAEL 444


>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 37   ERLIEELHGIFSRSHVNVQDVQKLMAGYKSDPKDWRK 73
            ERL+ E+ G+  R    V D +K +    + P D R+
Sbjct: 1537 ERLMAEVQGVMERLLDWVSDTEKTLVQQDASPADVRQ 1573


>SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)
          Length = 447

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 10  LKVSQCTDMEILPIEKPLKVNREIAGLERL 39
           L+V +CTD EIL  +  LK++     L+ L
Sbjct: 152 LRVFECTDSEILNDDALLKISTNCPQLQSL 181


>SB_3155| Best HMM Match : C1_4 (HMM E-Value=0.16)
          Length = 295

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 9   KLKVSQCTDMEILPIEKPLKVNREIAGLE 37
           KL + +C D ++ PI+K L+ N ++  LE
Sbjct: 215 KLLLLECIDFQLSPIQK-LETNMKVHSLE 242


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,675,625
Number of Sequences: 59808
Number of extensions: 82400
Number of successful extensions: 331
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 323
Number of HSP's gapped (non-prelim): 13
length of query: 81
length of database: 16,821,457
effective HSP length: 59
effective length of query: 22
effective length of database: 13,292,785
effective search space: 292441270
effective search space used: 292441270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)