GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000183-TA|BGIBMGA000183-PA|IPR010300|Cysteine
dioxygenase type I
         (81 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1137 + 24623967-24623991,24625815-24625831,24626100-246262...    29   0.47 
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561...    27   2.5  
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25...    26   4.4  
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23...    26   4.4  
09_05_0005 + 20026190-20026343,20026483-20026682,20026918-200273...    26   4.4  
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473...    25   7.6  

>08_02_1137 +
           24623967-24623991,24625815-24625831,24626100-24626216,
           24626399-24626440,24627246-24629705
          Length = 886

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 22  PIEKPLKVNREIAGLERLIEELHGIFSRSHVNVQDV 57
           P   P   NR   G E+ + E+ G+F  S V++Q+V
Sbjct: 230 PEGMPFPRNRHFVGREKELSEIEGMFFGSTVDIQEV 265


>12_02_1286 -
           27555143-27555191,27555290-27555511,27555911-27556162,
           27556683-27557062,27557202-27557311,27557864-27558033,
           27558236-27558444,27558528-27558617,27559125-27559264,
           27559356-27559463,27559626-27559716,27560736-27560852,
           27561497-27561767,27561892-27562193,27562400-27562469,
           27563464-27563702,27564613-27564846,27564943-27565179,
           27565276-27565734
          Length = 1249

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%)

Query: 9   KLKVSQCTDMEILPIEKPLKVNREIAGLERLIEELHGIFSRSHVNVQDVQKLMAGYKSDP 68
           +L+  Q  DM+  PI K LK  RE   LE+ ++ L    S +    + +   M   K++ 
Sbjct: 856 QLEYEQKRDMQA-PIIK-LKETRE--SLEKELKSLQERESEARAEAEQISNQMEELKAEA 911

Query: 69  KDWR 72
           +DW+
Sbjct: 912 EDWK 915


>12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-250315,
            250429-250556,250764-250862,250953-251061,251301-251380,
            251464-251691,251768-251833,251970-252086,252538-252735,
            252847-252963,253056-253115,253228-253314,253419-253502,
            253623-253757,253837-253899,253979-254083,254174-254286,
            254374-254626,254715-254851,254970-255248,255352-256354,
            256450-256935,257023-257193,257285-257470,257820-257942,
            258024-258134,258225-258395
          Length = 1708

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 32   EIAGLERLIEELHGIFSRSHVNVQDVQKLMAGYKS 66
            E+A   +L EE   IF + ++NVQ V  L+   +S
Sbjct: 1071 EVAVEAQLFEEAFAIFKKFNLNVQAVNVLLDNIRS 1105


>11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-234912,
            235048-235175,235383-235481,235572-235680,235920-235999,
            236083-236310,236387-236452,236589-236705,237142-237339,
            237451-237567,237660-237719,237832-237918,238023-238106,
            238233-238367,238446-238508,238588-238692,238781-238893,
            238981-239233,239322-239458,239577-239855,239958-240960,
            241054-241539,241627-241797,241890-242075,242426-242548,
            242630-242740,242834-243004
          Length = 1708

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 32   EIAGLERLIEELHGIFSRSHVNVQDVQKLMAGYKS 66
            E+A   +L EE   IF + ++NVQ V  L+   +S
Sbjct: 1071 EVAVEAQLFEEAFAIFKKFNLNVQAVNVLLDNIRS 1105


>09_05_0005 +
           20026190-20026343,20026483-20026682,20026918-20027309,
           20027646-20027778,20027858-20027942,20028216-20028235
          Length = 327

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)

Query: 1   MDVENANCKLKVSQCTDMEILPIEKPLKVNREIAGLERLIEELHG 45
           +++E  + KL  +Q T  E+L     LK+  +  G ER ++E  G
Sbjct: 280 IEIEKLSEKLATAQRTFNELLAQNNELKIKIQETGRERQMKEATG 324


>12_02_0626 -
           21344530-21344986,21346132-21346469,21347300-21347338,
           21347572-21347629,21349854-21350136,21350404-21350766,
           21350768-21350840
          Length = 536

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 13  SQCTDMEILPIEKPLKVNREIAGLERLIEELHGIFS-RSHVNVQDV 57
           S C+ ME +PI     V+       +L++++ G F  R+H N ++V
Sbjct: 266 SSCSPMEGIPILHISVVDLSALSYNKLMDDIGGRFQRRAHHNFRNV 311


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,680
Number of Sequences: 37544
Number of extensions: 70788
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 6
length of query: 81
length of database: 14,793,348
effective HSP length: 60
effective length of query: 21
effective length of database: 12,540,708
effective search space: 263354868
effective search space used: 263354868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)