Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000181-TA|BGIBMGA000181-PA|IPR007110|Immunoglobulin-
like, IPR008957|Fibronectin, type III-like fold,
IPR003599|Immunoglobulin subtype, IPR003598|Immunoglobulin subtype 2,
IPR013151|Immunoglobulin
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0816 + 7502669-7503145                                           30   3.9  
07_03_0971 + 23038409-23039134,23040321-23040611                       29   6.8  
02_03_0240 - 16739628-16740369,16740392-16740978                       29   6.8  

>12_01_0816 + 7502669-7503145
          Length = 158

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 133 TWVWRAQNISVSAGAVLLLPCSAKGQPTPRISWE 166
           TW+W  Q   V  GA  +LP + KG    R  W+
Sbjct: 54  TWLWWRQRGEVDDGAGFVLPLAEKGGAHTRRPWQ 87


>07_03_0971 + 23038409-23039134,23040321-23040611
          Length = 338

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 49  SAASGSYTCEVRAESGELARRTVRIEVHKPPKIADFHFPEE--LEVGGSTQATCSL 102
           + ASG + C VR    +  R    I+ H  P +   HF  +  + V GS   TC +
Sbjct: 147 TVASGGFDCTVRIWDVKSGRCVRAIDAHSEP-VTSVHFIRDGSIIVSGSHDGTCKI 201


>02_03_0240 - 16739628-16740369,16740392-16740978
          Length = 442

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 175 RHVLWSQSEASDMGGGSVLSDGTVWLKEVTP-GHEGWYRCTAR 216
           R +L  ++   D GGG++L+ GT W +   P G  GW    +R
Sbjct: 173 RLLLRIKAPDGDDGGGAMLNLGTKWCRSSPPRGEPGWPSSASR 215


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.133    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,867,731
Number of Sequences: 37544
Number of extensions: 554319
Number of successful extensions: 1073
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 3
length of query: 412
length of database: 14,793,348
effective HSP length: 84
effective length of query: 328
effective length of database: 11,639,652
effective search space: 3817805856
effective search space used: 3817805856
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)