GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000181-TA|BGIBMGA000181-PA|IPR007110|Immunoglobulin-
like, IPR008957|Fibronectin, type III-like fold,
IPR003599|Immunoglobulin subtype, IPR003598|Immunoglobulin subtype 2,
IPR013151|Immunoglobulin
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation...    27   6.4  
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    26   8.5  
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    26   8.5  

>SPAC32A11.04c |tif212|tif22, SPAC6B12.17c|translation initiation
           factor eIF2 beta subunit|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 321

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 49  SAASGSYTCEVRAESGELARRTVRIEVHKPPKIADFH-FPEELEVGGSTQATCSL 102
           SA++   T ++  ESGEL   +++ +  K  K AD   F +ELE   +  AT  L
Sbjct: 93  SASAEEQTEDITTESGELDFSSMK-KKKKKKKSADLSAFEKELEASSTGDATSDL 146


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 2/26 (7%)

Query: 195 DGTVWLKEVTPGHEGWYRCTARVQHS 220
           DG +W  ++  GH+G Y  TA   H+
Sbjct: 477 DGAIW--DLAVGHDGTYFATASADHT 500


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 9/40 (22%), Positives = 26/40 (65%)

Query: 156 KGQPTPRISWEYSADGDNWRHVLWSQSEASDMGGGSVLSD 195
           +GQ     +W+ + DG+N ++  +++++++  G G++ S+
Sbjct: 109 RGQALSSATWDNAEDGENSKNDNYNENQSALTGSGAMESN 148


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,776,582
Number of Sequences: 5004
Number of extensions: 67641
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 3
length of query: 412
length of database: 2,362,478
effective HSP length: 74
effective length of query: 338
effective length of database: 1,992,182
effective search space: 673357516
effective search space used: 673357516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)