GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000181-TA|BGIBMGA000181-PA|IPR007110|Immunoglobulin-
like, IPR008957|Fibronectin, type III-like fold,
IPR003599|Immunoglobulin subtype, IPR003598|Immunoglobulin subtype 2,
IPR013151|Immunoglobulin
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr...    31   1.1  
At5g41770.1 68418.m05086 crooked neck protein, putative / cell c...    31   1.9  
At4g04510.1 68417.m00654 protein kinase family protein contains ...    29   5.7  
At2g48010.1 68415.m06009 serine/threonine protein kinase (RFK3) ...    29   7.5  
At1g55610.1 68414.m06365 protein kinase family protein contains ...    29   7.5  
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel...    28   9.9  
At4g38180.1 68417.m05390 far-red impaired responsive protein, pu...    28   9.9  
At3g52780.2 68416.m05816 purple acid phosphatase (PAP20) identic...    28   9.9  
At3g52780.1 68416.m05815 purple acid phosphatase (PAP20) identic...    28   9.9  
At2g01950.1 68415.m00130 leucine-rich repeat transmembrane prote...    28   9.9  

>At3g13380.1 68416.m01683 leucine-rich repeat family protein / protein
            kinase family protein contains Pfam domains PF00560:
            Leucine Rich Repeat and PF00069: Protein kinase domain
          Length = 1164

 Score = 31.5 bits (68), Expect = 1.1
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 285  IETRDTNSGIITSEMTINHAGPEHAGEYRCLAR-NLYGADELVFRLFVKERPSIPEEVRI 343
            +   DT+  + T   T  +  PE+   +RC A+ ++Y    ++  L   ++P  PEE   
Sbjct: 1010 VSALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKKPIDPEEFGE 1069

Query: 344  SDVWPRKARITWRMARGAMV 363
             +     A+  +R  RGA +
Sbjct: 1070 DNNLVGWAKQLYREKRGAEI 1089


>At5g41770.1 68418.m05086 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 705

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 17/51 (33%), Positives = 22/51 (43%)

Query: 154 SAKGQPTPRISWEYSADGDNWRHVLWSQSEASDMGGGSVLSDGTVWLKEVT 204
           S K     R  WE + +GD   H LW +    +M    V S   VW + VT
Sbjct: 104 SQKDYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVT 154


>At4g04510.1 68417.m00654 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 648

 Score = 29.1 bits (62), Expect = 5.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 339 EEVRISDVWPRKARITWRMARGAMVSHYSIQYRALNRE 376
           EE R+   W  +ARI   +ARG +  H   Q R ++R+
Sbjct: 427 EEKRLLLTWDMRARIIEGVARGLVYLHEDSQLRIIHRD 464


>At2g48010.1 68415.m06009 serine/threonine protein kinase (RFK3)
           identical to receptor-like serine/threonine kinase
           [Arabidopsis thaliana] gi|2465927|gb|AAC50045
          Length = 617

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 347 WPRKARITWRMARGAMVSHYSIQYRALNRE 376
           WP + RI   MARG    HY  Q   ++R+
Sbjct: 383 WPLRQRIALGMARGLAYLHYGAQPSIIHRD 412


>At1g55610.1 68414.m06365 protein kinase family protein contains
            Prosite:PS00107: Protein kinases ATP-binding region
            signature
          Length = 1166

 Score = 28.7 bits (61), Expect = 7.5
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 285  IETRDTNSGIITSEMTINHAGPEHAGEYRCLAR-NLYGADELVFRLFVKERPSIPEEVRI 343
            +   DT+  + T   T  +  PE+   +RC A+ ++Y    ++  L   ++P  P E   
Sbjct: 1012 VSALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKKPIDPGEFGE 1071

Query: 344  SDVWPRKARITWRMARGAMV 363
             +     A+  +R  RGA +
Sbjct: 1072 DNNLVGWAKQLYREKRGAEI 1091


>At5g60530.1 68418.m07590 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 439

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 14  PSDQEVVWRREDGSLVDVAMEAGDERGILRL 44
           P D++  WR   G   D+ +E  DER  +R+
Sbjct: 303 PEDEQSEWREISGQKKDIIIERTDERNSVRV 333


>At4g38180.1 68417.m05390 far-red impaired responsive protein,
           putative similar to far-red impaired response protein
           FAR1 [Arabidopsis thaliana] gi|5764395|gb|AAD51282;
           contains Pfam:PF03101 domain: FAR1 family and PF04434:
           SWIM zinc finger
          Length = 788

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 47  VRSAASGSYTCEVRAESGELARRTVRIEVHKPPK--IADFHFPEELEVGGSTQ 97
           V+ A    YTC+V   + + A +TV + ++K  +  +A+ HF      GG  Q
Sbjct: 669 VQEAGKSLYTCDVAVVALQEAAKTVSLAMNKEVRRTMANRHFKASSVTGGKHQ 721


>At3g52780.2 68416.m05816 purple acid phosphatase (PAP20) identical
           to purple acid phosphatase GI:20257491 from [Arabidopsis
           thaliana]
          Length = 361

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 332 KERPSIPEEVRISDVWPRKARITW 355
           ++ P+ P++V IS V P K RI+W
Sbjct: 38  EDDPTFPDQVHISLVGPDKMRISW 61


>At3g52780.1 68416.m05815 purple acid phosphatase (PAP20) identical
           to purple acid phosphatase GI:20257491 from [Arabidopsis
           thaliana]
          Length = 427

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 332 KERPSIPEEVRISDVWPRKARITW 355
           ++ P+ P++V IS V P K RI+W
Sbjct: 38  EDDPTFPDQVHISLVGPDKMRISW 61


>At2g01950.1 68415.m00130 leucine-rich repeat transmembrane protein
            kinase, putative similar to brassinosteroid insensitive
            protein
          Length = 1143

 Score = 28.3 bits (60), Expect = 9.9
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 285  IETRDTNSGIITSEMTINHAGPEHAGEYRCLAR-NLYGADELVFRLFVKERPSIPEE 340
            I   DT+  + T   T  +  PE+   +RC A+ ++Y    ++  +   +RP+  EE
Sbjct: 991  ISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSIGVVMLEILSGKRPTDKEE 1047


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.133    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,706,770
Number of Sequences: 28952
Number of extensions: 389597
Number of successful extensions: 828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 822
Number of HSP's gapped (non-prelim): 10
length of query: 412
length of database: 12,070,560
effective HSP length: 83
effective length of query: 329
effective length of database: 9,667,544
effective search space: 3180621976
effective search space used: 3180621976
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)