Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000179-TA|BGIBMGA000179-PA|undefined
         (179 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9953| Best HMM Match : VWA (HMM E-Value=0)                          29   1.7  
SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   2.2  
SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)                     28   3.8  

>SB_9953| Best HMM Match : VWA (HMM E-Value=0)
          Length = 1034

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 82  EQDKIDQENDEYYRYDVDNAIXXXXXXXXXXXXXXXSLHAHVHVSSTCGASAGAGEFLVM 141
           ++D++D+   EY+ Y  + ++               S+ A VHV    GA  G  + L +
Sbjct: 803 DKDQVDELAREYWNYKEELSVEDGLLFKSDRIVVPRSMRAEVHVYLIHGAHMGESKSLSL 862

Query: 142 AR 143
           AR
Sbjct: 863 AR 864


>SB_56863| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4248

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 119 LHAHVHVSSTCGASAGAGEFLVMARRR---LGRYSLVCAPRVDDWVQLVLKRNADGTAH 174
           L  H H  S C A AG+ E+L ++  R   +   ++      D+W+++V  +  D   H
Sbjct: 722 LGTHAHNKSWCAAKAGSSEWLSVSLPRPYPITGLAVKGNEDTDEWIKIVKIKYTDDNIH 780


>SB_50961| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 1007

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 129 CGASAGAGEFLVMARRRLGRYSLVCAPRVDDWV-QLVLKRNADGTAHC 175
           CGA      F+   R  LGR       +V+DW  Q  LK+  D T  C
Sbjct: 413 CGAKPVLAPFICGVRNALGRIVGGQTAKVEDWPWQAGLKKGLDDTIVC 460


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,668,537
Number of Sequences: 59808
Number of extensions: 137595
Number of successful extensions: 261
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 3
length of query: 179
length of database: 16,821,457
effective HSP length: 78
effective length of query: 101
effective length of database: 12,156,433
effective search space: 1227799733
effective search space used: 1227799733
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 57 (27.1 bits)