GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000179-TA|BGIBMGA000179-PA|undefined
         (179 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15220-1|AAA61796.1| 1051|Drosophila melanogaster gp150 protein ...    28   8.4  
BT015195-1|AAT94424.1| 1076|Drosophila melanogaster RE72245p pro...    28   8.4  
BT011025-1|AAR30185.1| 1051|Drosophila melanogaster RE46351p pro...    28   8.4  
AY029705-1|AAK39644.1| 1051|Drosophila melanogaster leucine rich...    28   8.4  
AE013599-3379|AAG22195.1| 1051|Drosophila melanogaster CG5820-PC...    28   8.4  
AE013599-3378|AAM68222.1| 1051|Drosophila melanogaster CG5820-PB...    28   8.4  
AE013599-3377|AAF46831.1| 1051|Drosophila melanogaster CG5820-PA...    28   8.4  
AE013599-3376|AAM68221.1| 1076|Drosophila melanogaster CG5820-PD...    28   8.4  

>U15220-1|AAA61796.1| 1051|Drosophila melanogaster gp150 protein
           protein.
          Length = 1051

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 72  KLIRATARENEQDKIDQENDEYYRYDVD 99
           K++  T    E++  D ++ EYY YD D
Sbjct: 115 KMLNTTVAAGEKNSTDTDDSEYYDYDDD 142


>BT015195-1|AAT94424.1| 1076|Drosophila melanogaster RE72245p
           protein.
          Length = 1076

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 72  KLIRATARENEQDKIDQENDEYYRYDVD 99
           K++  T    E++  D ++ EYY YD D
Sbjct: 140 KMLNTTVAAGEKNSTDTDDSEYYDYDDD 167


>BT011025-1|AAR30185.1| 1051|Drosophila melanogaster RE46351p
           protein.
          Length = 1051

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 72  KLIRATARENEQDKIDQENDEYYRYDVD 99
           K++  T    E++  D ++ EYY YD D
Sbjct: 115 KMLNTTVAAGEKNSTDTDDSEYYDYDDD 142


>AY029705-1|AAK39644.1| 1051|Drosophila melanogaster leucine rich
           repeat protein GP150 protein.
          Length = 1051

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 72  KLIRATARENEQDKIDQENDEYYRYDVD 99
           K++  T    E++  D ++ EYY YD D
Sbjct: 115 KMLNTTVAAGEKNSTDTDDSEYYDYDDD 142


>AE013599-3379|AAG22195.1| 1051|Drosophila melanogaster CG5820-PC,
           isoform C protein.
          Length = 1051

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 72  KLIRATARENEQDKIDQENDEYYRYDVD 99
           K++  T    E++  D ++ EYY YD D
Sbjct: 115 KMLNTTVAAGEKNSTDTDDSEYYDYDDD 142


>AE013599-3378|AAM68222.1| 1051|Drosophila melanogaster CG5820-PB,
           isoform B protein.
          Length = 1051

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 72  KLIRATARENEQDKIDQENDEYYRYDVD 99
           K++  T    E++  D ++ EYY YD D
Sbjct: 115 KMLNTTVAAGEKNSTDTDDSEYYDYDDD 142


>AE013599-3377|AAF46831.1| 1051|Drosophila melanogaster CG5820-PA,
           isoform A protein.
          Length = 1051

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 72  KLIRATARENEQDKIDQENDEYYRYDVD 99
           K++  T    E++  D ++ EYY YD D
Sbjct: 115 KMLNTTVAAGEKNSTDTDDSEYYDYDDD 142


>AE013599-3376|AAM68221.1| 1076|Drosophila melanogaster CG5820-PD,
           isoform D protein.
          Length = 1076

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)

Query: 72  KLIRATARENEQDKIDQENDEYYRYDVD 99
           K++  T    E++  D ++ EYY YD D
Sbjct: 140 KMLNTTVAAGEKNSTDTDDSEYYDYDDD 167


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,830,023
Number of Sequences: 52641
Number of extensions: 201120
Number of successful extensions: 426
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 8
length of query: 179
length of database: 24,830,863
effective HSP length: 80
effective length of query: 99
effective length of database: 20,619,583
effective search space: 2041338717
effective search space used: 2041338717
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 59 (27.9 bits)