GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000179-TA|BGIBMGA000179-PA|undefined
         (179 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.0  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   4.0  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   4.0  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 131 ASAGAGEFLVMARRRLGRYSLVCAPRVDDWVQLVLKRNADGTAHCLLQH 179
           A+ G GE + +  + +   + +    VD+   L++ +NAD + H L  H
Sbjct: 180 ATTGKGELVSLTVQAMDSTNTMVY-MVDNKNTLIIYQNADDSFHRLSSH 227


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 76  ATARENEQDKIDQENDEYYRYD 97
           +T  + E  K ++ NDE   YD
Sbjct: 308 STGSDKENHKTEEPNDEVATYD 329


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 125 VSSTCGASAGAGEFLVMARRRLGRYSLVCAPRVDDWVQLV 164
           V+   GA++G G+ L+      G   +  AP+VD    LV
Sbjct: 9   VALVTGANSGIGKCLIECLVGKGMKVIGIAPQVDKMKTLV 48


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,080
Number of Sequences: 429
Number of extensions: 1281
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 179
length of database: 140,377
effective HSP length: 54
effective length of query: 125
effective length of database: 117,211
effective search space: 14651375
effective search space used: 14651375
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 41 (20.6 bits)