GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000179-TA|BGIBMGA000179-PA|undefined
         (179 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel...    27   7.2  
At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase, p...    27   9.5  

>At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel,
           putative (CNGC8) similar to cyclic nucleotide and
           calmodulin-regulated ion channel GI:4581207 from
           (Arabidopsis thaliana)
          Length = 728

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)

Query: 72  KLIRATARENEQDKIDQENDEYY 94
           K+     +E E++++D E+DEYY
Sbjct: 637 KIAELRRKEEEEEEMDYEDDEYY 659


>At5g01190.1 68418.m00024 laccase, putative / diphenol oxidase,
           putative similar to diphenol oxidase [Nicotiana
           tabacum][GI:1685087]
          Length = 553

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)

Query: 139 LVMARRRLGRYSLVCAPRVDDWVQLVLKRNADGTAH 174
           LV A R  G+Y +  AP  D  V  V  R A  T H
Sbjct: 264 LVSAARPSGQYLIAAAPFQDSAVVAVDNRTATATVH 299


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,252
Number of Sequences: 28952
Number of extensions: 91318
Number of successful extensions: 160
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 158
Number of HSP's gapped (non-prelim): 2
length of query: 179
length of database: 12,070,560
effective HSP length: 77
effective length of query: 102
effective length of database: 9,841,256
effective search space: 1003808112
effective search space used: 1003808112
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)