Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000178-TA|BGIBMGA000178-PA|undefined
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom...    29   0.58 
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce...    29   0.76 
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac...    27   4.1  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    26   5.4  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.4  
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb...    26   7.1  
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    26   7.1  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   9.4  

>SPBC1271.09 |||glycerophosphodiester
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 543

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 125 IYTGIELSFFSGVYSPSIGFTLAMGENAKQLVGLSGVFIGMGEVLGGALFGILGSKTTRW 184
           + TG+ L    G +    GF   +         + G+F+ +GE   G   G+L SKT+  
Sbjct: 371 LITGLVLQSIFGFFMS--GFYNQLVHKIAGFCVIYGIFLTLGEFGPGGNIGLLASKTS-- 426

Query: 185 GRDPIVIMGXXXXXXXXXXXXXNLPTVAPFGDTSEVSYITPSAELAMFCSFL 236
              P  I G              +  V  FG     +Y   ++ +A+F + L
Sbjct: 427 ---PTAIRGVYYGIAAAIGKCGAIAGVYAFGGDQVRNYFYAASAMAIFVAVL 475


>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 418

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 11/30 (36%), Positives = 22/30 (73%)

Query: 42  ALLRPIKRTTTVEDAKVHQRSKTNQVRQFQ 71
           AL +P+  T ++EDAK ++ ++ N V+Q++
Sbjct: 288 ALWQPVLETVSLEDAKKNENNRENLVKQWR 317


>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 8   VFIKFQGKSHIDLETRNVVFGALTGVCVL 36
           +F  FQ KSH+ LE+R V    L  +C L
Sbjct: 78  LFNYFQPKSHVVLESREVFSKPLQKLCTL 106


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 17/171 (9%)

Query: 1   MFFGNLFVFIKFQGKSHIDLETRNVVFGALTGVCVLGIVFLALLRPIKRTTTVEDAKVHQ 60
           +FF N+F  +K  G+    + T  VV  A+ G  +LGI+      P      +      +
Sbjct: 206 LFFINIFG-VKGYGEMEFIMSTIKVV--AMCGFIILGIIIDCGGVPTDHRGYMGTHIFRE 262

Query: 61  RSKTNQVRQFQYLMSEATTEKSRFFYRTEVVEIAYRDAEGPLEAFKGALK--LFCTKDML 118
            +  ++ + F  + + A       F  TE V +A  + E P +AF  A++  LF      
Sbjct: 263 NAFRHKFKGFCAVFTSAAFS----FSGTEYVGVAAAETENPAKAFPVAVRQTLFRIAIFY 318

Query: 119 LLS---VTFIYTGIE--LSFFSGVYSPSIGFTLAMGE-NAKQLVGLSGVFI 163
           +LS   V+ + +G +  L+ + GV   +  F LA+ + N K L  +    I
Sbjct: 319 ILSLFIVSLLISGADPRLTSYHGV--DASPFVLAIKDANIKALPSILNAII 367


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 208 LPTVAPFGDTSEVSYITPSAELAMFCSFLLGFGDACFNTQIYSILGGNYSDNSTSA 263
           LP +  F + S  S         MF    +GF DA F T+I + L   Y + +TSA
Sbjct: 130 LPELGSFQELSTSSL----GSFRMFQQIAVGFVDALFCTRIPASLWIKYKEYTTSA 181


>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/42 (33%), Positives = 18/42 (42%)

Query: 57  KVHQRSKTNQVRQFQYLMSEATTEKSRFFYRTEVVEIAYRDA 98
           K H     N+ R  Q  +++ T E   FF   E   I  RDA
Sbjct: 307 KEHYERLNNEKRAIQQKITQMTNETESFFQAKEEKMIETRDA 348


>SPAC644.08 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 7/66 (10%)

Query: 131 LSFFSGVYSPSIGFTLAMGENAKQLVGLSG----VFI--GMGEVLGGALFGILGSKTTRW 184
           L +FSG Y  +IG     G   K +VG S     +F+   + E+      G+      R 
Sbjct: 135 LKYFSGYYDTTIGLKTECGSYVK-IVGNSNPREWLFLSDNINELKAARKVGLHTGLVVRP 193

Query: 185 GRDPIV 190
           G DP+V
Sbjct: 194 GNDPVV 199


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 159 SGVFIGMGEVLGGALFGI 176
           SGV +  G  +GG LFGI
Sbjct: 289 SGVAVAFGSPIGGVLFGI 306


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.140    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,098,705
Number of Sequences: 5004
Number of extensions: 41368
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 8
length of query: 285
length of database: 2,362,478
effective HSP length: 72
effective length of query: 213
effective length of database: 2,002,190
effective search space: 426466470
effective search space used: 426466470
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)