Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000178-TA|BGIBMGA000178-PA|undefined
(285 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1271.09 |||glycerophosphodiester transporter|Schizosaccharom... 29 0.58
SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyce... 29 0.76
SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity fac... 27 4.1
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc... 26 5.4
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 5.4
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 26 7.1
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 26 7.1
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c... 25 9.4
>SPBC1271.09 |||glycerophosphodiester
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 543
Score = 29.5 bits (63), Expect = 0.58
Identities = 26/112 (23%), Positives = 43/112 (38%), Gaps = 7/112 (6%)
Query: 125 IYTGIELSFFSGVYSPSIGFTLAMGENAKQLVGLSGVFIGMGEVLGGALFGILGSKTTRW 184
+ TG+ L G + GF + + G+F+ +GE G G+L SKT+
Sbjct: 371 LITGLVLQSIFGFFMS--GFYNQLVHKIAGFCVIYGIFLTLGEFGPGGNIGLLASKTS-- 426
Query: 185 GRDPIVIMGXXXXXXXXXXXXXNLPTVAPFGDTSEVSYITPSAELAMFCSFL 236
P I G + V FG +Y ++ +A+F + L
Sbjct: 427 ---PTAIRGVYYGIAAAIGKCGAIAGVYAFGGDQVRNYFYAASAMAIFVAVL 475
>SPCC16A11.14 |sfh1||RSC complex subunit Sfh1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 418
Score = 29.1 bits (62), Expect = 0.76
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 42 ALLRPIKRTTTVEDAKVHQRSKTNQVRQFQ 71
AL +P+ T ++EDAK ++ ++ N V+Q++
Sbjct: 288 ALWQPVLETVSLEDAKKNENNRENLVKQWR 317
>SPAC1002.08c |mtf1||mitochondrial RNA polymerase specificity
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 8 VFIKFQGKSHIDLETRNVVFGALTGVCVL 36
+F FQ KSH+ LE+R V L +C L
Sbjct: 78 LFNYFQPKSHVVLESREVFSKPLQKLCTL 106
>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 5.4
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 17/171 (9%)
Query: 1 MFFGNLFVFIKFQGKSHIDLETRNVVFGALTGVCVLGIVFLALLRPIKRTTTVEDAKVHQ 60
+FF N+F +K G+ + T VV A+ G +LGI+ P + +
Sbjct: 206 LFFINIFG-VKGYGEMEFIMSTIKVV--AMCGFIILGIIIDCGGVPTDHRGYMGTHIFRE 262
Query: 61 RSKTNQVRQFQYLMSEATTEKSRFFYRTEVVEIAYRDAEGPLEAFKGALK--LFCTKDML 118
+ ++ + F + + A F TE V +A + E P +AF A++ LF
Sbjct: 263 NAFRHKFKGFCAVFTSAAFS----FSGTEYVGVAAAETENPAKAFPVAVRQTLFRIAIFY 318
Query: 119 LLS---VTFIYTGIE--LSFFSGVYSPSIGFTLAMGE-NAKQLVGLSGVFI 163
+LS V+ + +G + L+ + GV + F LA+ + N K L + I
Sbjct: 319 ILSLFIVSLLISGADPRLTSYHGV--DASPFVLAIKDANIKALPSILNAII 367
>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 251
Score = 26.2 bits (55), Expect = 5.4
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 208 LPTVAPFGDTSEVSYITPSAELAMFCSFLLGFGDACFNTQIYSILGGNYSDNSTSA 263
LP + F + S S MF +GF DA F T+I + L Y + +TSA
Sbjct: 130 LPELGSFQELSTSSL----GSFRMFQQIAVGFVDALFCTRIPASLWIKYKEYTTSA 181
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 57 KVHQRSKTNQVRQFQYLMSEATTEKSRFFYRTEVVEIAYRDA 98
K H N+ R Q +++ T E FF E I RDA
Sbjct: 307 KEHYERLNNEKRAIQQKITQMTNETESFFQAKEEKMIETRDA 348
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 25.8 bits (54), Expect = 7.1
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 131 LSFFSGVYSPSIGFTLAMGENAKQLVGLSG----VFI--GMGEVLGGALFGILGSKTTRW 184
L +FSG Y +IG G K +VG S +F+ + E+ G+ R
Sbjct: 135 LKYFSGYYDTTIGLKTECGSYVK-IVGNSNPREWLFLSDNINELKAARKVGLHTGLVVRP 193
Query: 185 GRDPIV 190
G DP+V
Sbjct: 194 GNDPVV 199
>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
2|||Manual
Length = 812
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 159 SGVFIGMGEVLGGALFGI 176
SGV + G +GG LFGI
Sbjct: 289 SGVAVAFGSPIGGVLFGI 306
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.325 0.140 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,098,705
Number of Sequences: 5004
Number of extensions: 41368
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 8
length of query: 285
length of database: 2,362,478
effective HSP length: 72
effective length of query: 213
effective length of database: 2,002,190
effective search space: 426466470
effective search space used: 426466470
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)
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