GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000178-TA|BGIBMGA000178-PA|undefined
         (285 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0807 - 23341971-23342153,23342300-23342397,23342451-233425...    33   0.20 
12_02_0806 - 23336329-23336511,23336658-23336781,23336817-233368...    32   0.61 
10_08_0777 + 20489528-20490649                                         32   0.61 
01_06_1058 - 34147025-34147069,34147190-34147339,34147983-341481...    31   1.4  
06_01_0295 - 2154069-2155483,2155561-2155708                           30   1.9  
06_03_0861 - 25486801-25486997,25487334-25487904,25488874-254889...    29   3.2  
06_02_0224 + 13250377-13250383,13250418-13250665,13250768-13251136     29   5.6  

>12_02_0807 -
           23341971-23342153,23342300-23342397,23342451-23342521,
           23342522-23342634,23342853-23342943,23343037-23343272,
           23343915-23343959,23344113-23344226,23344306-23344369,
           23345036-23345059,23345320-23345483,23345598-23345795
          Length = 466

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 231 MFCSFLLGFGDACFNTQIYSILGGNYSDNSTSAFALFKFTQVSGRSALL 279
           +F   L G GD   NTQ+ ++LG  + D   +AFA  K  Q SG  A++
Sbjct: 377 LFIGALWGVGDGVLNTQLSALLGLLFEDVKEAAFAQLKVWQ-SGAIAVI 424


>12_02_0806 -
           23336329-23336511,23336658-23336781,23336817-23336879,
           23336880-23336992,23337212-23337302,23337397-23337461,
           23338279-23338323,23338500-23338692,23339381-23339544,
           23339645-23339836
          Length = 410

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 227 AELAMFCSFLLGFGDACFNTQIYSILGGNYSDNSTSAFALFKFTQVSGRSALL 279
           A + +F   L G GD   +TQ+ ++LG  + D   +AFA ++  Q SG  A++
Sbjct: 317 AAVPLFIGALWGVGDGVLHTQLSALLGLLFEDVKEAAFAQWRVWQ-SGAIAVI 368


>10_08_0777 + 20489528-20490649
          Length = 373

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 132 SFFSGVYSPSIGFTLAMGENAKQLVGLSGVFIGMG 166
           +F  G  + S+ F  AM  N KQL+G SGV +G+G
Sbjct: 121 TFAIGTATASLAFGCAMDSNIKQLLGASGV-VGLG 154


>01_06_1058 -
           34147025-34147069,34147190-34147339,34147983-34148117,
           34148391-34148449,34149142-34149258,34149448-34149625,
           34149715-34149798,34150133-34150201,34150385-34150525,
           34150781-34150873,34151338-34151466,34152033-34152371,
           34152624-34152674
          Length = 529

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)

Query: 223 ITPSAELAMFCSFLLGFGDACFNTQIYSILGGNYSDNSTSAFALFK 268
           I P+A L  +   L+   D  FN  +  + G +YS NS  AF + K
Sbjct: 398 INPAAGLEHYVESLMKRADVEFNVVVTQMNGNDYSSNSVHAFHIGK 443


>06_01_0295 - 2154069-2155483,2155561-2155708
          Length = 520

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 11/114 (9%)

Query: 127 TGIELSFFSGVYSPSIGFTLAMGENAKQLVGLSGVFIGMGEVLGGALFGILGSKTTRWGR 186
           TGI    F   Y+P +  T+ MGE+A  L  +    +G+G  L  ++F +      R+GR
Sbjct: 306 TGINAIAF---YAPVLLRTIGMGESASLLSAVVTGVVGVGATL-LSMFAV-----DRFGR 356

Query: 187 DPIVIMGXXXXXXXXXXXXXNLPTVAPFGDTSEVSYITPSAELAMFCSFLLGFG 240
             + + G              +   A  GD   VS    +A + +  +++ GFG
Sbjct: 357 RTLFLAGGAQMLASQVLIGGIM--AAKLGDDGGVSRAWAAALILLIAAYVAGFG 408


>06_03_0861 -
           25486801-25486997,25487334-25487904,25488874-25488976,
           25489281-25489376,25490319-25490449
          Length = 365

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 120 LSVTFIYTGIELSFFSGVYSPSIGFTLAMGENAKQLVGLSGVF 162
           L   +I+  +  SFF+G+ S  I FT A  EN +Q    +G+F
Sbjct: 273 LGELYIFGAVLFSFFTGLLSQIICFTYAGLENVEQGCCATGMF 315


>06_02_0224 + 13250377-13250383,13250418-13250665,13250768-13251136
          Length = 207

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 124 FIYTGIELSFFSGVYSPSIGFTLAMGENAKQLVGLSGVFIGMGEVLGGALFGIL 177
           F+   I  +   G  +P++ F LA+G    Q+  L+GVF  + ++LG  +  +L
Sbjct: 28  FVAVAIGANISGGHVNPAVTFGLALG---GQITILTGVFYWIAQLLGAIVGAVL 78


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.140    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,912,809
Number of Sequences: 37544
Number of extensions: 260767
Number of successful extensions: 656
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 648
Number of HSP's gapped (non-prelim): 9
length of query: 285
length of database: 14,793,348
effective HSP length: 81
effective length of query: 204
effective length of database: 11,752,284
effective search space: 2397465936
effective search space used: 2397465936
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)