GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000178-TA|BGIBMGA000178-PA|undefined
         (285 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.)              95   8e-20
SB_46301| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.003
SB_14942| Best HMM Match : DUF895 (HMM E-Value=6e-07)                  33   0.27 
SB_41721| Best HMM Match : MFS_1 (HMM E-Value=2.2e-26)                 31   0.82 
SB_13098| Best HMM Match : 7tm_1 (HMM E-Value=0.53)                    29   4.4  
SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064)                 29   5.8  
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_27727| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08)                 28   7.6  
SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  
SB_3856| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.6  

>SB_51104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 94.7 bits (225), Expect = 8e-20
 Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 26/149 (17%)

Query: 117 MLLLSVTFIYTGIELSFFSGVYSPSIGFTLAMGE-------------------------N 151
           M+LLS+ F YTG+EL+FFSGVY   +G   A  +                         N
Sbjct: 1   MMLLSLCFAYTGLELTFFSGVYGTCVGMYDAADDTVDWVDNLTTLVTPRLLRRNTQQLPN 60

Query: 152 AKQLVGLSGVFIGMGEVLGGALFGILGSKTTRWGRDPIVIMGXXXXXXXXXXXXXNLPTV 211
           +K+L+GL+G+FIG+GE++GG  FGI G +T R+GRDPIV+ G             N+P+ 
Sbjct: 61  SKKLIGLTGMFIGVGEIIGGLTFGIFGKRTNRFGRDPIVLFGLFIHWVAFILIFLNIPSD 120

Query: 212 APFGDTSEVSYI-TPSAELAMFCSFLLGF 239
           AP G T +V+Y+  P      F S+   F
Sbjct: 121 APTGGTMKVAYLHAPKNTCKAFTSYWRDF 149



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 1/32 (3%)

Query: 247 QIYSILGGNYSDNSTSAFALFKFTQVSGRSAL 278
           QIYS+LG  Y D+S  AFALFKF Q SG +A+
Sbjct: 251 QIYSLLGFAYPDDSAPAFALFKFVQ-SGAAAI 281


>SB_46301| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 68

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 1/32 (3%)

Query: 247 QIYSILGGNYSDNSTSAFALFKFTQVSGRSAL 278
           QIYS+LG  Y D+S  AFALFKF Q SG +A+
Sbjct: 21  QIYSLLGFAYPDDSAPAFALFKFVQ-SGAAAI 51


>SB_14942| Best HMM Match : DUF895 (HMM E-Value=6e-07)
          Length = 523

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 224 TPSAELAMF---CSFLLGFGDACFNTQIYSILGGNYSDNSTSAFALFKFTQVSG 274
           TP A L       + L G+GDA + TQI ++ G  ++DN   AF+ ++  +  G
Sbjct: 403 TPDASLVWIFYVLAALQGYGDAVWQTQINAMYGVYFADNQEPAFSNYRLWESLG 456


>SB_41721| Best HMM Match : MFS_1 (HMM E-Value=2.2e-26)
          Length = 440

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 13/46 (28%), Positives = 26/46 (56%)

Query: 221 SYITPSAELAMFCSFLLGFGDACFNTQIYSILGGNYSDNSTSAFAL 266
           S +   A + +  SF+ GFG +C  T  Y+++ G+++   ++A  L
Sbjct: 117 SQVNTIAMMYLTYSFIFGFGSSCVFTPAYTVVPGHFTKWQSTAMGL 162


>SB_13098| Best HMM Match : 7tm_1 (HMM E-Value=0.53)
          Length = 158

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 213 PFGDTSEVSYIT--PSAELAMFCSFLLGFGDACFNTQIYSILGGNYSDNSTSAFALFK 268
           PF  T  V  I   P      F + LLG+ ++  N  IY I+G  +      AF L K
Sbjct: 91  PFAVTMVVKVILDKPIPRAVDFGTLLLGYANSACNVVIYVIMGKQFRQAFREAFGLRK 148


>SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 79  TEKSRFFYRTEVVEIAYRDAEGPLEAFKGALKLFCTKDMLLLSVTFIYTGIELSFFSG 136
           T    FFY    ++  + +   PL+     L + C    L LS+T++Y+  +   FSG
Sbjct: 624 TNSFLFFYLALFIKRGHAEIHLPLQDHLIGLLVGCFIMQLTLSLTYLYSAFKSGVFSG 681


>SB_54976| Best HMM Match : MFS_1 (HMM E-Value=0.00064)
          Length = 538

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 112 FCTKDMLLLSVTFIYTGIELSFFSGVYSPSIGFTLAMGENAKQLVGL-SGVFIGMGEVLG 170
           +CT+  L L +  I  G+  +    V++  + +  +  E A  L GL SG + G+G   G
Sbjct: 426 YCTRPWLFLPIELIQ-GVTTA---AVWTSFVSYVGSKTEIATTLQGLVSGFYTGLGYATG 481

Query: 171 GALFGIL 177
           G L G +
Sbjct: 482 GLLGGCM 488


>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1683

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 37  GIVFLALLRPIKRTTTVEDAKVHQRSKTNQVRQFQYLMSEATTEKSRFFYRTEVVEIAYR 96
           G++     RP+     V D   H R +T   +  +YL  +  T+K    Y  E+  + + 
Sbjct: 871 GVLMRFRERPVALAGDVSDMFCHVRLRTEDRKYHRYLWRDLETDKPPDVY--EINCLVFG 928

Query: 97  DAEGPLEA 104
           D   P EA
Sbjct: 929 DKSSPCEA 936


>SB_27727| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-08)
          Length = 353

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 9/43 (20%)

Query: 219 EVSYITPSAELAMFCSFLLGFGDACFNTQIY-SILGGNYSDNS 260
           ++SY+  S  LA FCS+L  F        +Y S++ GN++D +
Sbjct: 243 KLSYMAASVILAFFCSYLFAF--------VYTSVIAGNFTDTT 277


>SB_47673| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 48  KRTTTVEDAKVHQRSKTNQVRQFQYLMSEATTEKSRFFYRTEVVEIAYR---DAEGPLEA 104
           KR+   +D K  ++ K +     + + +  +T+        +++ + YR   D   PL A
Sbjct: 119 KRSLDNDDEKEEEKEKEDVTYDLRQVTTRHSTKMRTDCTDYKLILLLYRLCADINLPLSA 178

Query: 105 FKGALKLFCTKDMLLLSVTFIYTG--IELSFFSGVYSPSIGFT 145
             G+LKL+C + +       I      E   ++ +Y P  G T
Sbjct: 179 LWGSLKLWCNRTLCAARANVIGMAHLTEDPDYAKLYHPKAGGT 221


>SB_3856| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 134 FSGVYSPSIGFTLAMGENAKQLVGLSGVFIGMGEVLGGALFGILG 178
           FS  ++ S+   +A GE +   VG+S    G+G ++GG L G+ G
Sbjct: 46  FSVTHAVSVASGIASGELSSAGVGVS--LSGIGVLVGGPLAGVAG 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.140    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,613,563
Number of Sequences: 59808
Number of extensions: 276836
Number of successful extensions: 816
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 13
length of query: 285
length of database: 16,821,457
effective HSP length: 81
effective length of query: 204
effective length of database: 11,977,009
effective search space: 2443309836
effective search space used: 2443309836
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)