Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000178-TA|BGIBMGA000178-PA|undefined
(285 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62720.2 68418.m07871 integral membrane HPP family protein co... 33 0.22
At5g62720.1 68418.m07872 integral membrane HPP family protein co... 33 0.22
At4g37250.1 68417.m05273 leucine-rich repeat family protein / pr... 33 0.29
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote... 31 1.2
At3g47980.1 68416.m05231 integral membrane HPP family protein co... 30 1.5
At3g43790.3 68416.m04680 transporter-related low similarity to S... 30 1.5
At3g43790.2 68416.m04679 transporter-related low similarity to S... 30 1.5
At3g43790.1 68416.m04678 transporter-related low similarity to S... 30 1.5
At5g13740.1 68418.m01599 sugar transporter family protein contai... 30 2.0
At3g09470.2 68416.m01126 expressed protein 29 2.7
At3g09470.1 68416.m01125 expressed protein 29 2.7
At4g38350.1 68417.m05422 patched family protein similar to SP|O1... 29 3.6
At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein ... 29 3.6
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 29 3.6
At5g49770.1 68418.m06164 leucine-rich repeat transmembrane prote... 29 4.7
At1g65430.1 68414.m07423 zinc finger protein-related contains we... 29 4.7
At1g42470.1 68414.m04897 patched family protein similar to SP|O1... 29 4.7
At3g13080.2 68416.m01636 ABC transporter family protein almost i... 28 6.2
At3g13080.1 68416.m01635 ABC transporter family protein almost i... 28 6.2
At3g05150.1 68416.m00559 sugar transporter family protein simila... 28 6.2
At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing ... 28 8.2
>At5g62720.2 68418.m07871 integral membrane HPP family protein
contains Pfam domain, PF04982: HPP family
Length = 200
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 210 TVAPFGDTSEVSYITPSAELA-MFCSFLLGFGDACFNTQIYSILGGNYSDNSTSAFALFK 268
+VAP G S + +ITPSA A + FL G A +S+ G + S + A
Sbjct: 124 SVAPLGAVSAILFITPSAPAARKYNIFLAQIGCAAIGVVAFSVFGPGWLARSVALAASIA 183
Query: 269 FTQVS 273
F ++
Sbjct: 184 FMVIT 188
>At5g62720.1 68418.m07872 integral membrane HPP family protein
contains Pfam domain, PF04982: HPP family
Length = 243
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 210 TVAPFGDTSEVSYITPSAELA-MFCSFLLGFGDACFNTQIYSILGGNYSDNSTSAFALFK 268
+VAP G S + +ITPSA A + FL G A +S+ G + S + A
Sbjct: 124 SVAPLGAVSAILFITPSAPAARKYNIFLAQIGCAAIGVVAFSVFGPGWLARSVALAASIA 183
Query: 269 FTQVS 273
F ++
Sbjct: 184 FMVIT 188
>At4g37250.1 68417.m05273 leucine-rich repeat family protein /
protein kinase family protein contains protein kinase
domain, Pfam:PF00069; contains leucine-rich repeats,
Pfam:PF00560
Length = 768
Score = 32.7 bits (71), Expect = 0.29
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 25 VVFGALTGVCVLGIVFLALLRPIKRTTTVEDAKVHQRSKTNQVRQFQYLMSEATTEKSRF 84
+V G + G+ +L ++FL + R K + QR++T+ + + S ++ E+SR
Sbjct: 333 IVVGDIAGIGILAVIFLYIYRCKKNKIVDNNNNDKQRTETDTITLSTFSSSSSSPEESRR 392
Query: 85 F 85
F
Sbjct: 393 F 393
>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
kinase, putative
Length = 751
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 25 VVFGALTGVCVLGIVFLALLRPIKRTTTVEDAKVHQRSKTNQVRQFQYL 73
+V G L G+ +LGIVF + + KR T +K S ++V ++ L
Sbjct: 341 IVVGDLAGLAILGIVFFYIYQSRKRKTVTATSKWSTSSTDSKVSKWYCL 389
>At3g47980.1 68416.m05231 integral membrane HPP family protein
contains Pfam domain, PF04982: HPP family
Length = 252
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 210 TVAPFGDTSEVSYITPSAELA-MFCSFLLGFGDACFNTQIYSILGGNYSDNSTSAFALFK 268
+VAP G S + + TPSA A + F G A +S G ++ ST+ A
Sbjct: 133 SVAPLGAVSAILFTTPSAPAARKYNMFTAQIGCAAIGVLAFSAFGPSWLARSTALAASIA 192
Query: 269 FTQVS 273
F ++
Sbjct: 193 FMVIT 197
>At3g43790.3 68416.m04680 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 484
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 140 PSIGFTLAMGENAKQL--VGLSGVFIGMGEVLGGALFGIL-GSKTTRWGRDPIVIMG 193
P I F + AKQ +G F+G ++G AL I G R+GR PI+++G
Sbjct: 56 PYIYFMIRDFHIAKQEEDIGFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIG 112
>At3g43790.2 68416.m04679 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 484
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 140 PSIGFTLAMGENAKQL--VGLSGVFIGMGEVLGGALFGIL-GSKTTRWGRDPIVIMG 193
P I F + AKQ +G F+G ++G AL I G R+GR PI+++G
Sbjct: 56 PYIYFMIRDFHIAKQEEDIGFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIG 112
>At3g43790.1 68416.m04678 transporter-related low similarity to
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF00083: major facilitator
superfamily protein
Length = 478
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 140 PSIGFTLAMGENAKQL--VGLSGVFIGMGEVLGGALFGIL-GSKTTRWGRDPIVIMG 193
P I F + AKQ +G F+G ++G AL I G R+GR PI+++G
Sbjct: 56 PYIYFMIRDFHIAKQEEDIGFYAGFVGSSFMIGRALTSIFWGKLADRYGRKPIILIG 112
>At5g13740.1 68418.m01599 sugar transporter family protein contains
Pfam profile PF00083: major facilitator superfamily
protein
Length = 486
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 156 VGLSGVFIGMGEVLGGALFGIL-GSKTTRWGRDPIVIMG 193
+G F+G +LG AL + G R+GR PI+++G
Sbjct: 76 IGFYAGFVGCSFMLGRALTSVFWGIVADRYGRKPIILLG 114
>At3g09470.2 68416.m01126 expressed protein
Length = 437
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 236 LLGFGDACFNTQIYSILGGNYSDNSTSAFALFKFTQ 271
+LG GD NTQI ++L + ++ AFA K Q
Sbjct: 353 ILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQ 388
>At3g09470.1 68416.m01125 expressed protein
Length = 464
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 236 LLGFGDACFNTQIYSILGGNYSDNSTSAFALFKFTQ 271
+LG GD NTQI ++L + ++ AFA K Q
Sbjct: 353 ILGIGDGILNTQISALLALLFKHDTEGAFAQLKVWQ 388
>At4g38350.1 68417.m05422 patched family protein similar to
SP|O15118 Niemann-Pick C1 protein precursor from Homo
sapiens (PID:g2276463); contains Pfam profile PF02460
Patched family
Length = 1064
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 109 LKLFCTKDMLLLSVTFIYTGIELSFFSGVYSPSIGFTLAMGENAKQLVGLSGVFIGMGEV 168
LK T D++ ++ +++ + +S G F ++ +K L+GLSGV + + V
Sbjct: 547 LKRESTADVITIAASYLVMFVYISVTLGDAPQFYTFYIS----SKVLLGLSGVVLVLLSV 602
Query: 169 LGG-ALFGILGSKTT 182
LG +F LG K+T
Sbjct: 603 LGSVGVFSALGVKST 617
>At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein /
D111/G-patch domain-containing protein contains Pfam
profiles PF01585: G-patch domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 497
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Query: 216 DTSEVSYITPSAELAMFCSFLL----GFGDAC 243
D++++S++TP++E M C F + FG +C
Sbjct: 125 DSAKISFLTPTSESMMICKFFMQQRCRFGSSC 156
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 55 DAKVHQRSKTNQVRQFQYLMSEATTEKSRFFYRTEVVEIAYRDAEGPLEAFKGALKLFCT 114
D VH +++ Q S+ +EK+ F V+ RDA GP + G LK +
Sbjct: 166 DRSVHTDVLLALLKKIQRTRSQPVSEKTEFGNVASQVQTTTRDANGPQQ--NGVLKGYQG 223
Query: 115 KDMLLLSVTFIYTGIELSFFS 135
+ + L + + ++ FS
Sbjct: 224 RKLSPLKLIIMSASLDARVFS 244
>At5g49770.1 68418.m06164 leucine-rich repeat transmembrane protein
kinase, putative
Length = 946
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 7 FVFIKFQGKSHIDLE-TRNVVFGALTGVCVLGIVFLALLRPIKRTTTVEDAKVHQRSKTN 65
++F+ Q K+ DLE ++ V + GV V+G+V L LL + + K QR+ T+
Sbjct: 539 YIFVADQYKTFSDLEDSKTVSMKVIIGV-VVGVVVLLLLLALAGIYALRQKKRAQRA-TD 596
Query: 66 QVRQF 70
Q+ F
Sbjct: 597 QMNPF 601
>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
similarity to zinc finger proteins and a Pfam:PF01485
IBR domain
Length = 567
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 70 FQYLMSEATTEKSRFFYRTEVVEIAYRDAEGPLEAFKGALKLFCTKDMLLLSVTFIY 126
F+YL EA + R E + Y DA+GP E F F TK L SVT Y
Sbjct: 443 FEYLQGEAESGLERLHQCAEKELLPYLDAKGPSEDFNE----FRTKLAGLTSVTKNY 495
>At1g42470.1 68414.m04897 patched family protein similar to
SP|O15118 Niemann-Pick C1 protein precursor from Homo
sapiens (GB:AAB63982) (GI:2276463); contains Pfam
profile PF02460 Patched family
Length = 1272
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 109 LKLFCTKDMLLLSVTFIYTGIELSFFSGVYSPSIGFTLAMGENAKQLVGLSGVFIGMGEV 168
LK T D++ ++++++ +S G F + +K L+GLSGV + M V
Sbjct: 589 LKRESTADVITIAISYLVMFAYISLTLGDSPRLKSFYIT----SKVLLGLSGVLLVMLSV 644
Query: 169 LGG-ALFGILGSKTT 182
LG F +G K+T
Sbjct: 645 LGSVGFFSAVGMKST 659
>At3g13080.2 68416.m01636 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1489
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 63 KTNQVRQFQYLMSEATTEKS---RFFYRTEVVEIAYRDAEGPLEAFKGALKLFCTKDMLL 119
K ++ F +S ATT +S F +R++ + ++ + P GA++ C + +L
Sbjct: 1123 KAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSR-PKFYTAGAMEWLCFRLDML 1181
Query: 120 LSVTFIYTGIEL-SFFSGVYSPSI-GFTLAMG 149
S+TF+++ + L S +GV PS+ G + G
Sbjct: 1182 SSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYG 1213
>At3g13080.1 68416.m01635 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1514
Score = 28.3 bits (60), Expect = 6.2
Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 63 KTNQVRQFQYLMSEATTEKS---RFFYRTEVVEIAYRDAEGPLEAFKGALKLFCTKDMLL 119
K ++ F +S ATT +S F +R++ + ++ + P GA++ C + +L
Sbjct: 1123 KAPLIQHFSETISGATTIRSFSQEFRFRSDNMRLSDGYSR-PKFYTAGAMEWLCFRLDML 1181
Query: 120 LSVTFIYTGIEL-SFFSGVYSPSI-GFTLAMG 149
S+TF+++ + L S +GV PS+ G + G
Sbjct: 1182 SSLTFVFSLVFLVSIPTGVIDPSLAGLAVTYG 1213
>At3g05150.1 68416.m00559 sugar transporter family protein similar
to sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 470
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 32 GVCVLGIVFLALLRPIKRTTTVED 55
GVCVL I+F+A L P + T+E+
Sbjct: 441 GVCVLAIIFIAKLVPETKGRTLEE 464
>At2g41060.1 68415.m05070 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 451
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 133 FFSGVYSPSIGFTLAMGENAKQLVGLSGVFIGMGEVLGGALFGILGS 179
F +G F A+G+ L+ G +G+ + G AL G LG+
Sbjct: 342 FIAGNNQAVQAFNPAIGQALTALLASQGAGLGLNQAFGQALLGTLGT 388
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.325 0.140 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,732,205
Number of Sequences: 28952
Number of extensions: 220446
Number of successful extensions: 627
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 619
Number of HSP's gapped (non-prelim): 21
length of query: 285
length of database: 12,070,560
effective HSP length: 80
effective length of query: 205
effective length of database: 9,754,400
effective search space: 1999652000
effective search space used: 1999652000
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
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