Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000177-TA|BGIBMGA000177-PA|IPR009724|Protein of unknown
function DUF1301
         (213 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    26   0.19 
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    26   0.19 
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.34 
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    25   0.34 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.2  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.2  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.7  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 107 FFTFVTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPDVPGMF 166
           F + + PIL + +T  +V ++ Y  +   Y  I     A + IH+   ED  + D   MF
Sbjct: 556 FMSLLNPILSN-VT--FVIDVVYVCDVC-YSTIEEANKAGELIHKIDTEDHDIRDEIEMF 611

Query: 167 TTMHANGKPLFIEARFF 183
           +   AN +  F  A FF
Sbjct: 612 SLQIANEQVEFNAAGFF 628


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 26.2 bits (55), Expect = 0.19
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 107 FFTFVTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPDVPGMF 166
           F + + PIL + +T  +V ++ Y  +   Y  I     A + IH+   ED  + D   MF
Sbjct: 281 FMSLLNPILSN-VT--FVIDVVYVCDVC-YSTIEEANKAGELIHKIDTEDHDIRDEIEMF 336

Query: 167 TTMHANGKPLFIEARFF 183
           +   AN +  F  A FF
Sbjct: 337 SLQIANEQVEFNAAGFF 353


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 145 ATKRIHEFKVEDVFVPDVPGMFTTMHANGKPLFIEARFFNNPLHYAKI 192
           A + IH+ + ED  + D   MF+   AN +  F  A FF  P++Y  +
Sbjct: 311 AGELIHQIQTEDHDIIDEIEMFSLQIANEQVEFNAAGFF--PINYTLV 356



 Score = 22.2 bits (45), Expect = 3.2
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 111 VTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDV 157
           V  +++H  T  YV  ++ N+  + +K I       +++ EF V+ V
Sbjct: 438 VPSLIIHVSTSAYVATVWINSVINRWKFIEF----IRKVLEFDVKCV 480


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 145 ATKRIHEFKVEDVFVPDVPGMFTTMHANGKPLFIEARFFNNPLHYAKI 192
           A + IH+ + ED  + D   MF+   AN +  F  A FF  P++Y  +
Sbjct: 342 AGELIHQIQTEDHDIIDEIEMFSLQIANEQVEFNAAGFF--PINYTLV 387


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 4   LCLKQFGNESKLAVLALTDPSKSLKCTSTYNSITRKYAIKLKEET 48
           L +K   N  +   L+ T  +   K    +N   RKY  K ++ET
Sbjct: 298 LSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCKNEDET 342


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 4   LCLKQFGNESKLAVLALTDPSKSLKCTSTYNSITRKYAIKLKEET 48
           L +K   N  +   L+ T  +   K    +N   RKY  K ++ET
Sbjct: 190 LSMKLSKNNDQCLDLSKTKETNLEKSNLNHNEQLRKYLCKNEDET 234


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 164 GMFTTMHANGKPLFIEARFFNN 185
           G +   H NG P +I    F N
Sbjct: 436 GYYENNHYNGDPNYISPEVFPN 457


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 164 GMFTTMHANGKPLFIEARFFNN 185
           G +   H NG P +I    F N
Sbjct: 384 GYYENNHYNGDPNYISPEVFPN 405


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,968
Number of Sequences: 317
Number of extensions: 2117
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 213
length of database: 114,650
effective HSP length: 54
effective length of query: 159
effective length of database: 97,532
effective search space: 15507588
effective search space used: 15507588
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)