Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000177-TA|BGIBMGA000177-PA|IPR009724|Protein of unknown
function DUF1301
(213 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 33 0.024
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 32 0.055
SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces ... 29 0.68
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 27 2.1
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 26 3.6
SPCC576.15c |ksg1||serine/threonine protein kinase Ksg1|Schizosa... 26 3.6
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 26 4.8
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 25 6.3
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 8.4
>SPAC1834.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 178
Score = 33.5 bits (73), Expect = 0.024
Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 48 TPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQP-MLIREAS--SIGSTSLLVAICSV 104
T +Y L I IK FS+ + I P ML+ +A S+G+ +V +
Sbjct: 18 TSFSLAAVYDAPLKKAIGNIKKFSIGSLGLTYMISPVMLLLDAGGLSLGTRMSMVFLACT 77
Query: 105 VGFFTFVTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPD 161
T ++ ++H+ K YV+E + T N KR+ ++ ++ + +PD
Sbjct: 78 T---TSLSTAIIHWAAKSYVSEATLKGNVLSLN--TFNILGKKRLSQYTLDKLKIPD 129
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 32.3 bits (70), Expect = 0.055
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 11 NESKLAVLALTDPSKSLKCTSTYNSITRKY-AIKLKEETPIGTEKIYYGTLTPQIKAIKI 69
N+ ++ + LTDP +I KY +I + P T+KI+Y + AI
Sbjct: 377 NDPRITSMVLTDPG----FVDDLQAIVEKYQSISSDFQIPFKTKKIFYSFFVKTLHAISS 432
Query: 70 FSLCTSIAGIAIQPMLIREASSIGSTSLL 98
S S +A+ ++I S+ +L
Sbjct: 433 SSAAESSIALALHMLVINAFQSMEKLKIL 461
>SPAC1D4.02c |||human GRASP protein homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 345
Score = 28.7 bits (61), Expect = 0.68
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 15 LAVLALTDPSKSLKCTSTYNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAI 67
+A+L + P +L+ S ITRK IK+ + IG + + ++ P + AI
Sbjct: 68 MALLRDSSPEVTLEVFSLKGQITRKVNIKINSDEKIGM-VLQWASIAPAVDAI 119
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 11 NESKLAVLALTDPSKSLKCTSTYNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKI 69
NE +VLA T+ + LKC + A++ K++ P GT+ +P+ K +K+
Sbjct: 430 NEQLNSVLAATNLATELKCEDINKLKQLRLALETKKDLP-GTKVQLKPAYSPEGKLLKL 487
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 3.6
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 96 SLLVAICSVVGFFTFVTPILLHFITKKYV 124
+ L+AI SV+GFFT +T L F+ Y+
Sbjct: 173 TFLLAIVSVLGFFTRIT--FLAFVIAPYI 199
>SPCC576.15c |ksg1||serine/threonine protein kinase
Ksg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 592
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 20 LTDPSKSLKCTSTYNSITRKYAIKLKEETPIGTEK 54
L + S S T+T NS R+YAIK+ ++ I EK
Sbjct: 105 LGEGSYSTVLTATENSTKREYAIKVLDKRHIIKEK 139
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 4.8
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 10/107 (9%)
Query: 13 SKLAVLALTDPSKSLKCTSTYNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSL 72
S + + L P ++ + T + + +KE G ++ + I + + +
Sbjct: 322 SLILIGLLVSPDDPRLMGNSSDGSTSPFVLAIKEANIRGLPSVFNAVII--ISTVSVANS 379
Query: 73 CTSIAGIAIQ--------PMLIREASSIGSTSLLVAICSVVGFFTFV 111
CT A + P +G L +A+C + GFF ++
Sbjct: 380 CTFTASRTLHAMAAKGDAPRFFAYTDRLGRPLLAMAVCLLFGFFAYI 426
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 152 FKVEDVFVPDVPGMFTTMHANGKPLFIEARFFNNPLHYAKIMGYDKPMDFKLGE 205
+K +D PDV T+H A + N H +G D + + +GE
Sbjct: 610 YKKKDALRPDVSEKVFTVHVRANKRLTPAEYNRNIFHIEFDLG-DSGLTYDIGE 662
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 25.0 bits (52), Expect = 8.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 84 MLIREASSIGSTSLLVAICSVVGF 107
ML+ + IG TS L AIC + F
Sbjct: 428 MLVTGVTGIGKTSCLYAICRELNF 451
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.136 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 963,947
Number of Sequences: 5004
Number of extensions: 37954
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 11
length of query: 213
length of database: 2,362,478
effective HSP length: 70
effective length of query: 143
effective length of database: 2,012,198
effective search space: 287744314
effective search space used: 287744314
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)
- SilkBase 1999-2023 -