Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000177-TA|BGIBMGA000177-PA|IPR009724|Protein of unknown
function DUF1301
         (213 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC002748-1|AAH02748.2|  260|Homo sapiens transmembrane protein 7...   111   2e-24
AK000540-1|BAA91240.1|  161|Homo sapiens protein ( Homo sapiens ...   103   3e-22
AL606833-1|CAI41228.1|  402|Homo sapiens ring finger protein 128...    32   1.7  
AL391315-2|CAI39546.1|  402|Homo sapiens ring finger protein 128...    32   1.7  
AK126553-1|BAC86589.1|  402|Homo sapiens protein ( Homo sapiens ...    32   1.7  

>BC002748-1|AAH02748.2|  260|Homo sapiens transmembrane protein 70
           protein.
          Length = 260

 Score =  111 bits (267), Expect = 2e-24
 Identities = 60/163 (36%), Positives = 84/163 (51%), Gaps = 4/163 (2%)

Query: 55  IYYGTLTPQIKAIKIFSLCTSIAGIAIQPMLIREASSIGSTSLL---VAICSVVGFFTFV 111
           IY G +   +  +K FS  TS+ G+   P +  + ++I  +  L   +    ++G FT +
Sbjct: 95  IYTGNMARAVFGVKCFSYSTSLIGLTFLPYIFTQNNAISESVPLPIQIIFYGIMGSFTVI 154

Query: 112 TPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPDVPGMFTTMHA 171
           TP+LLHFITK YV  +Y+ A T TYKAIT N    +    F   DV +PD   +FTT +A
Sbjct: 155 TPVLLHFITKGYVIRLYHEATTDTYKAITYNAMLAETSTVFHQNDVKIPDAKHVFTTFYA 214

Query: 172 NGKPLFIEARFFNNPLHYAKIMGYDK-PMDFKLGETQESKNQK 213
             K L +    F N   Y  +MGYDK      + ET E K  K
Sbjct: 215 KTKSLLVNPVLFPNREDYIHLMGYDKEEFILYMEETSEEKRHK 257


>AK000540-1|BAA91240.1|  161|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20533 fis, clone KAT10931. ).
          Length = 161

 Score =  103 bits (248), Expect = 3e-22
 Identities = 56/151 (37%), Positives = 78/151 (51%), Gaps = 4/151 (2%)

Query: 67  IKIFSLCTSIAGIAIQPMLIREASSIGSTSLL---VAICSVVGFFTFVTPILLHFITKKY 123
           +K FS  TS+ G+   P +  + ++I  +  L   +    ++G FT +TP+LLHFITK Y
Sbjct: 8   VKCFSYSTSLIGLTFLPYIFTQNNAISESVPLPIQIIFYGIMGSFTVITPVLLHFITKGY 67

Query: 124 VTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPDVPGMFTTMHANGKPLFIEARFF 183
           V  +Y+ A T TYKAIT N    +    F   DV +PD   +FTT +A  K L +    F
Sbjct: 68  VIRLYHEATTDTYKAITYNAMLAETSTVFHQNDVKIPDAKHVFTTFYAKTKSLLVNPVLF 127

Query: 184 NNPLHYAKIMGYDK-PMDFKLGETQESKNQK 213
            N   Y  +MGYDK      + E  E K  K
Sbjct: 128 PNREDYIHLMGYDKEEFILYMEEASEEKRHK 158


>AL606833-1|CAI41228.1|  402|Homo sapiens ring finger protein 128
           protein.
          Length = 402

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 108 FTFVTPILLHFITKKYVTEIYYNAETSTYKAI 139
           FTF+  I   F    YVT  YYN ETS Y AI
Sbjct: 16  FTFLLKITASFSMSAYVTVTYYN-ETSNYTAI 46


>AL391315-2|CAI39546.1|  402|Homo sapiens ring finger protein 128
           protein.
          Length = 402

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 108 FTFVTPILLHFITKKYVTEIYYNAETSTYKAI 139
           FTF+  I   F    YVT  YYN ETS Y AI
Sbjct: 16  FTFLLKITASFSMSAYVTVTYYN-ETSNYTAI 46


>AK126553-1|BAC86589.1|  402|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44589 fis, clone BEAST2000981, weakly  similar
           to Mus musculus ring finger protein 130 (Rnf130). ).
          Length = 402

 Score = 31.9 bits (69), Expect = 1.7
 Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 108 FTFVTPILLHFITKKYVTEIYYNAETSTYKAI 139
           FTF+  I   F    YVT  YYN ETS Y AI
Sbjct: 16  FTFLLKITASFSMSAYVTVTYYN-ETSNYTAI 46


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,669,592
Number of Sequences: 224733
Number of extensions: 1157959
Number of successful extensions: 1827
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1824
Number of HSP's gapped (non-prelim): 5
length of query: 213
length of database: 73,234,838
effective HSP length: 87
effective length of query: 126
effective length of database: 53,683,067
effective search space: 6764066442
effective search space used: 6764066442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)