Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000177-TA|BGIBMGA000177-PA|IPR009724|Protein of unknown
function DUF1301
         (213 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g35790.1 68415.m04392 expressed protein                             59   3e-09
At1g75470.1 68414.m08766 purine permease-related contains Pfam p...    32   0.25 
At2g39080.1 68415.m04802 expressed protein                             29   1.8  
At5g47910.1 68418.m05918 respiratory burst oxidase protein D (Rb...    29   2.4  
At1g51630.1 68414.m05817 expressed protein contains Pfam PF03138...    27   7.2  
At5g10610.1 68418.m01228 cytochrome P450 family protein similar ...    27   9.5  
At2g28600.1 68415.m03476 expressed protein                             27   9.5  

>At2g35790.1 68415.m04392 expressed protein
          Length = 238

 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 36/148 (24%), Positives = 67/148 (45%), Gaps = 2/148 (1%)

Query: 45  KEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPMLIREASSIGSTSLLVAICSV 104
           KEE   G   +YYG ++  IK +K+ SL T    +++ P++    S   +  +  A+ S 
Sbjct: 79  KEEKDGGV--VYYGPISSTIKKVKLLSLSTCCLSVSLGPVITFMTSPGLNVIMKGAVAST 136

Query: 105 VGFFTFVTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPDVPG 164
           V F +  T   LH+    YV ++ +   + T++   + +  T      K  D+  PD   
Sbjct: 137 VIFLSASTTAALHWFVSPYVHKLRWQPGSDTFEVEMMTWLGTFSAKTLKFSDIRYPDTQR 196

Query: 165 MFTTMHANGKPLFIEARFFNNPLHYAKI 192
            + +  A+G   F++A    N    A++
Sbjct: 197 PYVSFKADGNFYFVDADHCPNKALLARL 224


>At1g75470.1 68414.m08766 purine permease-related contains Pfam
           profile PF03151: Domain of unknown function, DUF250; low
           similarity to purine permease [Arabidopsis thaliana]
           GI:7620007
          Length = 381

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 97  LLVAICSVVGFFTFVTPILLHFITKKYVTEIYYNAETS-TYKAIT 140
           L   +  VVGF   + P LLHF+ KK    + ++ ETS  + AIT
Sbjct: 75  LTQTLLQVVGFPILLLPFLLHFLIKKQKQLLIFSGETSLKHLAIT 119


>At2g39080.1 68415.m04802 expressed protein 
          Length = 351

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 30  TSTYNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPMLIREA 89
           TS  +S + K+A++ +E+ P   +  ++  LT  + A  I +  +S  G     + ++  
Sbjct: 27  TSASSSYSLKFALRRQEDKP---KVSFFLPLTSSLMATPIQASSSSTIGETSDGLKVQSH 83

Query: 90  SSIGSTSLLVAICSVVG 106
            SIG+  LL+    V+G
Sbjct: 84  VSIGANDLLIVGPGVLG 100


>At5g47910.1 68418.m05918 respiratory burst oxidase protein D
           (RbohD) / NADPH oxidase identical to respiratory burst
           oxidase protein D from Arabidopsis thaliana [gi:3242789]
          Length = 921

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 108 FTFVTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRI 149
           F  V  +L+    K Y+T+I+Y   T  Y A+ I  +A++R+
Sbjct: 564 FIIVYALLIVHGIKLYLTKIWYQKTTWMYLAVPILLYASERL 605


>At1g51630.1 68414.m05817 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;
          Length = 423

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 7/39 (17%)

Query: 128 YYNAETSTYKAITINFFATKRIHEFKVEDVFVPDVPGMF 166
           Y   E S Y+ + I+F+ + R       DVFVP +PG+F
Sbjct: 343 YLELENSEYENV-IDFYISSR------SDVFVPAIPGLF 374


>At5g10610.1 68418.m01228 cytochrome P450 family protein similar to
           Cytochrome P450 91A1 (SP:Q9FG65)  [Arabidopsis
           thaliana]; similar to cytochrome P450, Helianthus
           tuberosus, EMBL:HTCYP81L
          Length = 500

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 107 FFTFVTPILLHFITKKYV 124
           FF+F+T  L+ FITKK++
Sbjct: 8   FFSFLTATLIFFITKKFL 25


>At2g28600.1 68415.m03476 expressed protein 
          Length = 502

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 45  KEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPMLIREASSIGSTSLLVAICSV 104
           +EE  +G        +  Q KA ++ S+C ++ GI I  + + + + +     +  + SV
Sbjct: 188 EEEELLGNSPFLLYLVPSQSKASQVRSVCKALKGIGIHTVSLHQGAPLDHQ--ISGLKSV 245

Query: 105 VGFFTFVTP-ILLHFITKKYV 124
              F   TP  LL  +T K V
Sbjct: 246 EPEFIVATPERLLEIVTLKGV 266


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,770,073
Number of Sequences: 28952
Number of extensions: 182083
Number of successful extensions: 476
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 7
length of query: 213
length of database: 12,070,560
effective HSP length: 78
effective length of query: 135
effective length of database: 9,812,304
effective search space: 1324661040
effective search space used: 1324661040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)