GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000177-TA|BGIBMGA000177-PA|IPR009724|Protein of unknown
function DUF1301
         (213 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0723 + 35755407-35755457,35755653-35756321                       63   2e-10
02_05_0956 - 33064104-33066425                                         30   1.6  
01_06_1191 - 35297005-35297473,35297812-35298965                       30   1.6  
05_04_0402 - 20991628-20991755,20992461-20992578,20992670-209927...    29   3.7  

>03_06_0723 + 35755407-35755457,35755653-35756321
          Length = 239

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 34/138 (24%), Positives = 65/138 (47%)

Query: 55  IYYGTLTPQIKAIKIFSLCTSIAGIAIQPMLIREASSIGSTSLLVAICSVVGFFTFVTPI 114
           +Y G ++  I+ +K+ SL T    +++ P++    S   +  L  A+ S V F +  T  
Sbjct: 89  VYQGPISSTIRKVKLLSLSTCCLSVSLGPVITFMTSPDMNVILKGAVASTVIFLSATTTA 148

Query: 115 LLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPDVPGMFTTMHANGK 174
            LH+    Y+ ++ +   + +++A  +++ AT      K  DV  P+    F T  A G 
Sbjct: 149 ALHWFVSPYIHKLRWRPGSDSFEAEIMSWLATPLTRTIKFADVRPPETNRPFVTFRAEGN 208

Query: 175 PLFIEARFFNNPLHYAKI 192
             F++A  F N    A++
Sbjct: 209 FYFVDAEHFPNKALLARL 226


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 109 TFVTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDVFVPDVPGMFTT 168
           T ++P  L       + +   +  T    A+       K    F V D  +P  P  F  
Sbjct: 123 TTLSPSFLGLSPSNGLVQASNDGGTGAVIAVVDTGVYPKNRRSFTV-DPSLPPPPSTFRG 181

Query: 169 MHANGKPLFIEARFFNNPLHYAKIM--GYDKPMDFKLGETQESKN 211
            H    P F    + NN L  AK    GY+  +   + ETQESK+
Sbjct: 182 -HCISTPSFNATAYCNNKLVGAKYFCRGYEAALGHPIDETQESKS 225


>01_06_1191 - 35297005-35297473,35297812-35298965
          Length = 540

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 86  IREASSIGSTSLLVAICSVVGFFTFVTPILLHFITKK 122
           I E+  IG TS LV++ S  GFF  + P  + + + K
Sbjct: 349 IAESRGIGQTSTLVSLSSSFGFFGRLLPAFMDYYSAK 385


>05_04_0402 -
           20991628-20991755,20992461-20992578,20992670-20992762,
           20992841-20992978,20993070-20993197,20993270-20993430,
           20993548-20993638,20993731-20993787,20993986-20994139
          Length = 355

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 8/70 (11%)

Query: 45  KEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPMLIREASSIGSTSLLV--AIC 102
           +EETP   E+I++    P       F+L  S+       ++   A   G T++ V   IC
Sbjct: 137 EEETPSSVEQIWHLATQPAFLCYVAFALVVSLI------LMAHCAPRYGQTNIAVYIGIC 190

Query: 103 SVVGFFTFVT 112
           SV+G  T ++
Sbjct: 191 SVIGSLTVMS 200


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.136    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,432,033
Number of Sequences: 37544
Number of extensions: 196480
Number of successful extensions: 377
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 375
Number of HSP's gapped (non-prelim): 4
length of query: 213
length of database: 14,793,348
effective HSP length: 79
effective length of query: 134
effective length of database: 11,827,372
effective search space: 1584867848
effective search space used: 1584867848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)