Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000177-TA|BGIBMGA000177-PA|IPR009724|Protein of unknown
function DUF1301
(213 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_47140| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_3057| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-26) 29 2.2
SB_40691| Best HMM Match : Peptidase_C27 (HMM E-Value=1.1) 29 3.8
SB_32244| Best HMM Match : DUF1301 (HMM E-Value=5.1) 29 3.8
SB_46447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26) 29 3.8
SB_50581| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_45581| Best HMM Match : Ras (HMM E-Value=0.069) 28 5.0
SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_50604| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 31.5 bits (68), Expect = 0.54
Identities = 28/120 (23%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 24 SKSLKCTSTY-NSITRKYAIKLKEETPI-GTEKIYYGTLTPQIKAIKIFSLCTSIAGIAI 81
+++L+ T+T + + L ETP+ + + +A K ++ T+ A + +
Sbjct: 208 ARALESTATAPTELAATSTVVLSTETPLMSATSVQVEASVSETEATKTATITTTTATVIV 267
Query: 82 QPMLIREASSIGSTSLLVAICSVVGFFTFVTPILLHFITKKYVTEIYYNAETSTYKAITI 141
P S+ ST+ S++ + TF T L T Y T+ ++A + T K +TI
Sbjct: 268 LPSQQGITVSVESTT-----SSLLTYATFTTSPLTTSATMSYSTKETFSALSETSKPLTI 322
>SB_47140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 213
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 21 TDPSKSLKCTSTYNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIA 80
T+P+K+L TS+ T K AIKL + + + +Y + T +I+ F+ C +
Sbjct: 60 TEPTKALSETSSDRCQTVKVAIKLSLKRRLTSVDVYRVSPTLEIQRFITFANCYVMCLRL 119
Query: 81 IQPMLIREASSIGSTSLL 98
ML+ + SLL
Sbjct: 120 NNEMLVPVLQKLAKHSLL 137
>SB_3057| Best HMM Match : 7tm_1 (HMM E-Value=2.4e-26)
Length = 236
Score = 29.5 bits (63), Expect = 2.2
Identities = 21/89 (23%), Positives = 38/89 (42%)
Query: 35 SITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPMLIREASSIGS 94
SI AI ++ I Y+ T+TP+ + IF + G+A+ ++ S
Sbjct: 112 SIINLSAISIERYLCITFPLSYHTTMTPKKATVIIFGIWLFAFGMALLKYILWFWPSPNY 171
Query: 95 TSLLVAICSVVGFFTFVTPILLHFITKKY 123
++V C ++ FT + F T +Y
Sbjct: 172 ELIIVISCFLIPLFTMCLSYKMIFQTARY 200
>SB_40691| Best HMM Match : Peptidase_C27 (HMM E-Value=1.1)
Length = 406
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 37 TRKYAIKLKEETP---IGTEKIYYGTLTPQIKA-IKIFSLCTSI 76
T+ A+ E+TP +G K+Y LT + IK+FS CTSI
Sbjct: 205 TQTDAVPKTEKTPQCIVGNFKVYRKNLTGGVGLEIKVFSSCTSI 248
>SB_32244| Best HMM Match : DUF1301 (HMM E-Value=5.1)
Length = 149
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/34 (29%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 94 STSLLVAICSVVGFFT-FVTPILLHFITKKYVTE 126
++S+++ +C+ +G T F+TP+++ F+T+ E
Sbjct: 49 NSSIIMGLCNTIGGTTGFITPMMVGFMTRNKTAE 82
>SB_46447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 35 SITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPMLIR 87
S +A L+ T IG YGT+TPQ ++F + ++ GI + +L++
Sbjct: 79 SYKNSFAFVLQTVTTIG-----YGTITPQTTGGRMFCIFYALFGIPVAALLLQ 126
>SB_24826| Best HMM Match : MFS_1 (HMM E-Value=1.1e-26)
Length = 473
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/34 (29%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 94 STSLLVAICSVVGFFT-FVTPILLHFITKKYVTE 126
++S+++ +C+ +G T F+TP+++ F+T+ E
Sbjct: 373 NSSIIMGLCNTIGGTTGFITPMMVGFMTRNKTAE 406
>SB_50581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 157 VFVPDVPGMFTTMHANGKPLFIEARFFNNPLH 188
++ PD+P M HA G+P E R N LH
Sbjct: 15 IYAPDIPQMHVINHAKGQP-SEETRQVRNVLH 45
>SB_45581| Best HMM Match : Ras (HMM E-Value=0.069)
Length = 284
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 157 VFVPDVPGMFTTMHANGKPLFIEARFFNNPLH 188
++ PD+P M HA G+P E R N LH
Sbjct: 148 IYAPDIPQMHVINHAKGQP-SEETRQVRNVLH 178
>SB_44872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 18 LALTDPSKSLKCTSTYNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSLCTSI 76
L DP+ L + ++T+ + +K++E GT+ + I+A K ++ C SI
Sbjct: 423 LGSRDPTLRLAAYNLLCAVTKAFNLKIEERLLEGTDFVSKPPKGTVIRAAKSYNFCGSI 481
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.136 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,708,067
Number of Sequences: 59808
Number of extensions: 248086
Number of successful extensions: 535
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 531
Number of HSP's gapped (non-prelim): 11
length of query: 213
length of database: 16,821,457
effective HSP length: 79
effective length of query: 134
effective length of database: 12,096,625
effective search space: 1620947750
effective search space used: 1620947750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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