Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000177-TA|BGIBMGA000177-PA|IPR009724|Protein of unknown
function DUF1301
(213 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74031-7|CAB54239.1| 227|Caenorhabditis elegans Hypothetical pr... 60 1e-09
Z74031-6|CAA98457.1| 225|Caenorhabditis elegans Hypothetical pr... 60 1e-09
U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ... 31 0.47
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 31 0.47
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 31 0.47
AF125459-11|AAD12842.2| 315|Caenorhabditis elegans Serpentine r... 28 4.4
U88171-1|AAB42251.2| 630|Caenorhabditis elegans Hypothetical pr... 28 5.8
U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical pr... 28 5.8
AF106575-4|AAC78172.2| 548|Caenorhabditis elegans Hypothetical ... 28 5.8
U55375-6|AAC69046.2| 431|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z74031-7|CAB54239.1| 227|Caenorhabditis elegans Hypothetical
protein F32D8.5b protein.
Length = 227
Score = 60.1 bits (139), Expect = 1e-09
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 45 KEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPML---IREASSIGSTSLLVAI 101
K P G++K + + +K KI SL +S+AG+ + P+L + EA++ + ++ AI
Sbjct: 56 KGTLPPGSQKTPHDVVAMGVKGAKILSLSSSLAGVVMVPVLSSYLWEAAAERPSMMMFAI 115
Query: 102 CSVVGFFTF-VTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDV 157
+ TP+LLHF+ K++ +I+YN + + + NF K+ F +V
Sbjct: 116 VANTFLVLLSFTPLLLHFLAKRFPIDIFYNNDKKVFTTVHYNFLMQKQALRFSASEV 172
>Z74031-6|CAA98457.1| 225|Caenorhabditis elegans Hypothetical
protein F32D8.5a protein.
Length = 225
Score = 60.1 bits (139), Expect = 1e-09
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 4/117 (3%)
Query: 45 KEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQPML---IREASSIGSTSLLVAI 101
K P G++K + + +K KI SL +S+AG+ + P+L + EA++ + ++ AI
Sbjct: 54 KGTLPPGSQKTPHDVVAMGVKGAKILSLSSSLAGVVMVPVLSSYLWEAAAERPSMMMFAI 113
Query: 102 CSVVGFFTF-VTPILLHFITKKYVTEIYYNAETSTYKAITINFFATKRIHEFKVEDV 157
+ TP+LLHF+ K++ +I+YN + + + NF K+ F +V
Sbjct: 114 VANTFLVLLSFTPLLLHFLAKRFPIDIFYNNDKKVFTTVHYNFLMQKQALRFSASEV 170
>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform c protein.
Length = 1375
Score = 31.5 bits (68), Expect = 0.47
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 11/168 (6%)
Query: 23 PSKSLKCTSTYNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQ 82
P + K + S + + E+ + EK++ + ++++++ L T+ AGI +
Sbjct: 883 PKEVPKAVQRHESFSPTSELTTASES-LSAEKVHLDSEDEELESLEELELYTTDAGIQTE 941
Query: 83 PMLIREASSIGSTSLLVAICSVVGFFTFVTPILLHFITKKYVTEIYYNAETSTYKAITIN 142
++ + + LL I + TF T H K +Y +A TS+ + N
Sbjct: 942 TKVMLDKQDNATPKLLEIIKNCSTQTTFST---FHIPQK-----VYESASTSSDEEDHKN 993
Query: 143 FFATKRIHEFKVEDVFVPD--VPGMFTTMHANGKPLFIEARFFNNPLH 188
++ + K E F+ + V M T+ H + KP F+E H
Sbjct: 994 DGEDEKQKKSKQEVFFMTNTGVQTMHTSFHIDEKPKFVEENLQTQNTH 1041
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 31.5 bits (68), Expect = 0.47
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 11/168 (6%)
Query: 23 PSKSLKCTSTYNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQ 82
P + K + S + + E+ + EK++ + ++++++ L T+ AGI +
Sbjct: 883 PKEVPKAVQRHESFSPTSELTTASES-LSAEKVHLDSEDEELESLEELELYTTDAGIQTE 941
Query: 83 PMLIREASSIGSTSLLVAICSVVGFFTFVTPILLHFITKKYVTEIYYNAETSTYKAITIN 142
++ + + LL I + TF T H K +Y +A TS+ + N
Sbjct: 942 TKVMLDKQDNATPKLLEIIKNCSTQTTFST---FHIPQK-----VYESASTSSDEEDHKN 993
Query: 143 FFATKRIHEFKVEDVFVPD--VPGMFTTMHANGKPLFIEARFFNNPLH 188
++ + K E F+ + V M T+ H + KP F+E H
Sbjct: 994 DGEDEKQKKSKQEVFFMTNTGVQTMHTSFHIDEKPKFVEENLQTQNTH 1041
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 31.5 bits (68), Expect = 0.47
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 11/168 (6%)
Query: 23 PSKSLKCTSTYNSITRKYAIKLKEETPIGTEKIYYGTLTPQIKAIKIFSLCTSIAGIAIQ 82
P + K + S + + E+ + EK++ + ++++++ L T+ AGI +
Sbjct: 883 PKEVPKAVQRHESFSPTSELTTASES-LSAEKVHLDSEDEELESLEELELYTTDAGIQTE 941
Query: 83 PMLIREASSIGSTSLLVAICSVVGFFTFVTPILLHFITKKYVTEIYYNAETSTYKAITIN 142
++ + + LL I + TF T H K +Y +A TS+ + N
Sbjct: 942 TKVMLDKQDNATPKLLEIIKNCSTQTTFST---FHIPQK-----VYESASTSSDEEDHKN 993
Query: 143 FFATKRIHEFKVEDVFVPD--VPGMFTTMHANGKPLFIEARFFNNPLH 188
++ + K E F+ + V M T+ H + KP F+E H
Sbjct: 994 DGEDEKQKKSKQEVFFMTNTGVQTMHTSFHIDEKPKFVEENLQTQNTH 1041
>AF125459-11|AAD12842.2| 315|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 24 protein.
Length = 315
Score = 28.3 bits (60), Expect = 4.4
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 70 FSLCTSIAGIAIQPMLIREASS--IGSTSLLVAICSVVGFFTFVTPILLHFITKKYVTEI 127
+ L TS A I+I L+ S IG S L C ++ + F TP + ITK Y T
Sbjct: 68 YYLYTSEAIISIYDTLVAAFFSRLIGRVSPL---CPIIAPY-FFTPSI---ITKTYYTMS 120
Query: 128 YYNAETSTYKAITINF 143
YNA T I I+F
Sbjct: 121 TYNAAFKTISQIVISF 136
>U88171-1|AAB42251.2| 630|Caenorhabditis elegans Hypothetical
protein F25F8.1 protein.
Length = 630
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/82 (18%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 4 LCLKQFGNESKLAVLALTDPSKSLKCTSTYNSITRKYAIKLKEETPI----GTEKIYYGT 59
+C++ F +S+ LA+TD + T+++ I + IK + + E +Y
Sbjct: 330 ICVEAFSTQSRPNKLAVTDSCGGVYITNSHGEIEQNILIKNSSASSVCVDEKNELMYVSV 389
Query: 60 LTPQIKAIKIFSLCTSIAGIAI 81
+ + ++I +F + ++ + +
Sbjct: 390 MQSKGRSIHVFDVASNCRKVEV 411
>U39999-1|AAK93855.1| 277|Caenorhabditis elegans Hypothetical
protein F41G3.14 protein.
Length = 277
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 60 LTPQIKAIKIF-SLCTSIAGIAIQPMLIREASSIGSTSLLVAICSV 104
L+P ++AI + + C+ I G +++RE S SLL +C +
Sbjct: 216 LSPTLEAISVCRATCSVIVGKDDHMVMVRERGQFSSFSLLKKMCQI 261
>AF106575-4|AAC78172.2| 548|Caenorhabditis elegans Hypothetical
protein K04F1.13 protein.
Length = 548
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 65 KAIKIFSLCTSIAGIAIQPMLIREASSIGSTSLLVAICSVVGFF 108
+++ F CTSIAG A + I + S + S+L ++ + G F
Sbjct: 183 RSLLYFPKCTSIAGSANGGLKISQISEAHNVSVLTSLKKIEGVF 226
>U55375-6|AAC69046.2| 431|Caenorhabditis elegans Hypothetical
protein K03E6.7 protein.
Length = 431
Score = 27.5 bits (58), Expect = 7.7
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 36 ITRKYAIKLKEETPIGTEKIYYGTLTPQI-KAIKIFSLCTSIAGIAIQPMLIREASSIGS 94
++++Y+ ++ + P KI +L + KA + F TSI GIA Q + + + S
Sbjct: 81 LSKQYSSQIAKARPFYELKIKERSLREESQKAAERFERATSILGIAKQQVSLTQESLSRQ 140
Query: 95 TSLL 98
TS+L
Sbjct: 141 TSVL 144
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.322 0.136 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,153,257
Number of Sequences: 27539
Number of extensions: 207351
Number of successful extensions: 537
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 10
length of query: 213
length of database: 12,573,161
effective HSP length: 78
effective length of query: 135
effective length of database: 10,425,119
effective search space: 1407391065
effective search space used: 1407391065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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