Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000176-TA|BGIBMGA000176-PA|undefined
         (295 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.6  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   9.9  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 185 QQVTDYKYVKRAMEGLSNTDIKLHLEIQGLEGRLSF 220
           + +++Y Y     + L N D K+ L  +  E RL +
Sbjct: 3   RNISNYSYHDEKFKQLRNEDNKIDLRSRTKEERLQY 38


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 234 FRTNPQLVLKARPAVGARTLRFTHISNWIEQKLSKEFEKVL 274
           F  +   +LKA+P+   + L +  + N  ++ L  E +K+L
Sbjct: 365 FNDSGNPILKAKPSEVVQILGWKELPNVGDEILEVENDKIL 405


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,580
Number of Sequences: 429
Number of extensions: 2960
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 295
length of database: 140,377
effective HSP length: 57
effective length of query: 238
effective length of database: 115,924
effective search space: 27589912
effective search space used: 27589912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 43 (21.4 bits)