Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000176-TA|BGIBMGA000176-PA|undefined
         (295 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73200.1 68414.m08471 expressed protein                             63   2e-10
At1g17820.1 68414.m02206 expressed protein                             60   2e-09
At3g14590.1 68416.m01847 C2 domain-containing protein low simila...    31   0.70 
At1g53590.1 68414.m06088 C2 domain-containing protein                  31   0.92 
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi...    30   2.1  
At1g28240.1 68414.m03466 expressed protein                             29   4.9  
At2g20340.1 68415.m02375 tyrosine decarboxylase, putative simila...    28   8.6  

>At1g73200.1 68414.m08471 expressed protein
          Length = 779

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 28/96 (29%), Positives = 49/96 (51%)

Query: 193 VKRAMEGLSNTDIKLHLEIQGLEGRLSFNLPPPPHDRVWIGFRTNPQLVLKARPAVGART 252
           +K  +E +S   I L + +  L G L  ++ PPP D++W GF + P +      +VG   
Sbjct: 508 LKNIVEQVSQVPITLSIGVSSLRGTLCVHMKPPPSDQLWFGFTSMPDIEFNLVSSVGEHK 567

Query: 253 LRFTHISNWIEQKLSKEFEKVLVLPNMEDIIIDIMT 288
           +  +H++ ++  +       V+VLPN E + I  MT
Sbjct: 568 ITNSHVAMFLVNRFKTAIRDVMVLPNCESVTIPWMT 603



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 10  VQNRIQRKLTTLKLPSFMSPLTVTSLSLAGACPALGGV-AARWDARGVW-LDADLRYDGG 67
           V+ RIQR ++ +++PS++  L    + +    P + G      +  GVW  + D+ Y GG
Sbjct: 358 VRERIQRIMSNMRIPSYIGELICCDVDIGNLPPYIHGTRILPMEMNGVWAFEIDIEYTGG 417

Query: 68  AHIALLTQINLMKLKEKNMTLEEQLLEHSENVVESD 103
           A + + T+++  +   +    E +L  +S   V  D
Sbjct: 418 AGLEVETRVDAREEDLQKGIAEGKLQPNSAGDVPPD 453


>At1g17820.1 68414.m02206 expressed protein
          Length = 803

 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 26/95 (27%), Positives = 47/95 (49%)

Query: 193 VKRAMEGLSNTDIKLHLEIQGLEGRLSFNLPPPPHDRVWIGFRTNPQLVLKARPAVGART 252
           +K   E +S   I L + +  L G L  ++ PPP D++W GF + P +      +VG   
Sbjct: 505 LKTIAEQVSQVPISLSIRVSSLRGTLRVHMKPPPSDQLWFGFTSMPDIEFDLASSVGEHK 564

Query: 253 LRFTHISNWIEQKLSKEFEKVLVLPNMEDIIIDIM 287
           +  +H++ ++  +      + +VLPN E + I  M
Sbjct: 565 ITNSHVAMFLINRFKTAIREAVVLPNCESLTIPWM 599



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 10  VQNRIQRKLTTLKLPSFMSPLTVTSLSLAGACPALGGV-AARWDARGVW-LDADLRYDGG 67
           VQ RIQR L+ ++ PS++  L  + +      P +        +  GVW  + D+ Y G 
Sbjct: 355 VQARIQRLLSNMRTPSYIGELICSDVDTGNLPPHIHATRVLPMEMSGVWAFELDIEYSGD 414

Query: 68  AHIALLTQINLMKLKEKNMTLEEQLLEHSENVVESD 103
             I + T++++ ++  +    + +L   S  VV S+
Sbjct: 415 VVIDVETRVDIREVDLQQGITDTRLQPRSSGVVPSN 450


>At3g14590.1 68416.m01847 C2 domain-containing protein low
           similarity to SP|Q16974 Calcium-dependent protein kinase
           C (EC 2.7.1.-) {Aplysia californica}; contains Pfam
           profile PF00168: C2 domain
          Length = 737

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 206 KLHLEIQGLEGRL----SFNLPPPPHDRVWIGFRTNPQLVLKARPAV--GARTLRFTHIS 259
           KLHL    +EG++     F    P   R+ + F   P   +  +P    G        I+
Sbjct: 177 KLHLTGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPITTHGLDVAVLPGIA 236

Query: 260 NWIEQKLSKEFEKVLVLPNMEDIIIDI 286
            W+++ LS  FE+ LV PNM  +++D+
Sbjct: 237 GWLDKLLSVAFEQTLVEPNM--LVVDM 261


>At1g53590.1 68414.m06088 C2 domain-containing protein
          Length = 751

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 206 KLHLEIQGLEGRL----SFNLPPPPHDRVWIGFRTNPQLVLKARPAV--GARTLRFTHIS 259
           KLHL    +EG++     F    P   R+ + F   P   +  +P    G        I+
Sbjct: 177 KLHLTGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPIFTHGLDVAVLPGIA 236

Query: 260 NWIEQKLSKEFEKVLVLPNMEDIIIDI 286
            W+++ LS  FE+ LV PNM  +++D+
Sbjct: 237 GWLDKLLSIAFEQTLVQPNM--LVVDM 261


>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
           PF00010 helix-loop-helix DNA-binding domain; PMID:
           12679534; putative bHLH131 transcription factor
          Length = 1513

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 1/37 (2%)

Query: 70  IALLTQI-NLMKLKEKNMTLEEQLLEHSENVVESDTC 105
           ++L  QI +L  +KEKN+ +E++  E+ E + ES+ C
Sbjct: 569 VSLTRQIESLGTVKEKNLVMEKETQEYKEMLEESEKC 605


>At1g28240.1 68414.m03466 expressed protein
          Length = 581

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/30 (50%), Positives = 15/30 (50%)

Query: 219 SFNLPPPPHDRVWIGFRTNPQLVLKARPAV 248
           SF LPPPP DR   G R  P   L    AV
Sbjct: 150 SFTLPPPPADRKRTGPRPCPVCYLPVEEAV 179


>At2g20340.1 68415.m02375 tyrosine decarboxylase, putative similar
           to tyrosine/dopa decarboxylase [Papaver somniferum]
           GI:3282527, SP|Q06087 Tyrosine decarboxylase 3 (EC
           4.1.1.25) {Petroselinum crispum}; contains Pfam profile
           PF00282: Pyridoxal-dependent decarboxylase conserved
           domain
          Length = 490

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 10  VQNRIQRKLTTLKLPSFM-SPLTVTSLSLAGACPALGGVAARWDARGVWLDADLRYDGGA 68
           +Q  + R L    +P F+ + +  TS +      ALG +A   ++ G+W   D  Y G A
Sbjct: 228 LQEAVSRDLEAGLIPFFLCANVGTTSSTAVDPLAALGKIA---NSNGIWFHVDAAYAGSA 284

Query: 69  HI 70
            I
Sbjct: 285 CI 286


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,233,554
Number of Sequences: 28952
Number of extensions: 229347
Number of successful extensions: 531
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 11
length of query: 295
length of database: 12,070,560
effective HSP length: 81
effective length of query: 214
effective length of database: 9,725,448
effective search space: 2081245872
effective search space used: 2081245872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)