GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000176-TA|BGIBMGA000176-PA|undefined
         (295 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    59   9e-10
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    31   0.26 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   4.2  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    26   7.4  
SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   9.8  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   9.8  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    25   9.8  

>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 58.8 bits (136), Expect = 9e-10
 Identities = 27/89 (30%), Positives = 47/89 (52%)

Query: 205 IKLHLEIQGLEGRLSFNLPPPPHDRVWIGFRTNPQLVLKARPAVGARTLRFTHISNWIEQ 264
           + L + +  + G++   + PPP +RVW  F   P+L L   P V  + L   ++ N+I Q
Sbjct: 315 LALVIRLTHVSGKVRLLIKPPPSNRVWYAFYEKPRLHLIVEPMVARKQLTNNYLINFITQ 374

Query: 265 KLSKEFEKVLVLPNMEDIIIDIMTPTPVQ 293
           KL +   + +V+PNM D+   I    P++
Sbjct: 375 KLVELVHETIVMPNMNDLAFFIDNEAPIK 403



 Score = 30.7 bits (66), Expect = 0.26
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)

Query: 10  VQNRIQRKLTTLKLPSFMSPLTVTSLSLAGACPALGGVAARWDARG--VWLDADLRYDGG 67
           V  ++ +KL+ +K P  M+ + V  + +  A P + G+     + G  + + AD+ Y+G 
Sbjct: 232 VVEKLTKKLSRIKTPGIMTDVKVIDVDVGEAIPTVNGLKFESLSNGGELIVSADIWYEGD 291

Query: 68  AHIALLTQINL 78
                 T  N+
Sbjct: 292 CSFKAETTANI 302


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 69  HIALLTQINLMKLKEKNMTLEEQLLEHSENVVES 102
           H+ LL Q+ L+ +K KN   E    E  EN++ES
Sbjct: 653 HMKLLIQLGLLSVKVKNGDYENSSFETIENLIES 686


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 228 DRVWIGFRTNPQLVLKARPAVGARTLRFTHISNWIEQKLSKEFE 271
           DR ++    + ++VL      G   L F+ IS+ +++ L+KE++
Sbjct: 253 DRAYVKIEGDDEVVLLMNNLGGLSMLEFSAISHKVKEALAKEYK 296


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 43  ALGGVAARWDARGVWL 58
           +LG VAA W  +GVWL
Sbjct: 88  SLGAVAAYWIQQGVWL 103


>SPBC18H10.18c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 242

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 191 KYVKRAMEGLSNTDIKLHLEIQGLE 215
           KYV +A++GL++  + L L I GLE
Sbjct: 170 KYVAKAIQGLAHIILSLLLFILGLE 194


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/25 (48%), Positives = 18/25 (72%)

Query: 191 KYVKRAMEGLSNTDIKLHLEIQGLE 215
           KYV +A++GL++  + L L I GLE
Sbjct: 166 KYVAKAIQGLAHIILSLLLFILGLE 190


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 171  FLRMVDKIATNKYFQQVTDYKYVKRAMEGLSNTDIKLHLEIQGLE 215
            +LR   +I  NKY   + D + + + ++ L +T   L LE+  L+
Sbjct: 1205 YLRHEKEIMDNKYELTILDNRGLNQQVKSLQSTVDSLQLELNRLQ 1249


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,554
Number of Sequences: 5004
Number of extensions: 43580
Number of successful extensions: 116
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 10
length of query: 295
length of database: 2,362,478
effective HSP length: 72
effective length of query: 223
effective length of database: 2,002,190
effective search space: 446488370
effective search space used: 446488370
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)