GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000176-TA|BGIBMGA000176-PA|undefined
         (295 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838...    59   5e-09
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786...    33   0.36 
03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820           29   4.4  
01_06_1322 - 36290275-36291693,36291837-36291954,36292485-36292516     29   4.4  
03_04_0085 - 17182662-17182963,17183044-17183101,17183564-171836...    29   5.9  
06_01_0195 + 1512978-1513207,1513938-1513945,1514040-1514197,151...    28   7.8  
03_06_0617 - 35124114-35124148,35124243-35124335,35124415-351249...    28   7.8  

>02_05_1304 +
           35581172-35581345,35582504-35582748,35583148-35583829,
           35583908-35584262,35584558-35584649,35584889-35585083,
           35585167-35585840,35586134-35586224
          Length = 835

 Score = 58.8 bits (136), Expect = 5e-09
 Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 187 VTDYKYVKRAM-EGLSNTDIKLHLEIQGLEGRLSFNLPPPPHDRVWIGFRTNPQLVLKAR 245
           ++ +K +  ++ + +S   + L ++I  + G L  ++ PPP D++W GF + P L     
Sbjct: 500 ISGWKNIMHSIADHVSQVPLSLAIKISSVRGVLRVHVKPPPSDQLWYGFTSMPDLEWDIE 559

Query: 246 PAVGARTLRFTHISNWIEQKLSKEFEKVLVLPNMEDIIIDIM 287
            ++G R +  +HI + I  +        LVLPN E I I  M
Sbjct: 560 SSIGDRKITNSHIGSLIGNRFKASLRDSLVLPNCESISIPFM 601


>01_01_0994 -
           7861310-7862119,7862378-7862498,7862718-7862901,
           7862975-7863070,7863428-7863476,7863555-7863596,
           7863684-7863836,7865631-7865705,7866462-7866587
          Length = 551

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 229 RVWIGFRTNPQLVLKARPAVG--ARTLRFTHISNWIEQKLSKEFEKVLVLPNMEDIIIDI 286
           RV + F   P   +  +P +G       F  IS W+++ +   F + LV PNM  I ++ 
Sbjct: 83  RVRLCFVEPPYFQMTVKPLIGHGLDVTEFPGISGWLDKLMDTAFGQTLVEPNMLVIDVEK 142

Query: 287 MTPTP 291
              TP
Sbjct: 143 FVSTP 147


>03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820
          Length = 292

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 179 ATNKYFQQVTDYKYVKRAMEGLSNTDIKLHLEIQGLEGRLSFNLPPP 225
           A  K  Q   D +++KR  E L+  + +L  E+Q L   L F  PPP
Sbjct: 177 ARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRA-LKFAPPPP 222


>01_06_1322 - 36290275-36291693,36291837-36291954,36292485-36292516
          Length = 522

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 1/62 (1%)

Query: 48  AARWDARGVWLDADLRYDGGAHIAL-LTQINLMKLKEKNMTLEEQLLEHSENVVESDTCA 106
           A+R  A  +W+  DLR   G   AL +          K ++L   L E   + + SDT  
Sbjct: 44  ASRRCAEKMWMPVDLRLPSGPQAALGILAFEAAAAMSKLLSLHRSLSEQEVSRLRSDTMR 103

Query: 107 TP 108
           +P
Sbjct: 104 SP 105


>03_04_0085 -
           17182662-17182963,17183044-17183101,17183564-17183638,
           17183730-17183864,17183986-17184165,17184315-17184365,
           17184537-17184637,17185562-17185620,17185701-17185816,
           17186668-17186853,17187337-17187399,17187440-17187521,
           17188221-17188312,17189153-17189296,17190056-17190136,
           17190815-17190898,17191465-17191566,17191922-17192017,
           17192239-17192299,17192418-17192521
          Length = 723

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 263 EQKLSKEFEKVLVLPNMEDIIID 285
           E KLSK  E ++V P M DII+D
Sbjct: 152 ESKLSKFVEDIIVPPRMIDIIVD 174


>06_01_0195 +
           1512978-1513207,1513938-1513945,1514040-1514197,
           1514990-1515097
          Length = 167

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 45  GGVAARWDARGVWLDADLRYDGGAHIALLTQINLMKLKEKNMTLEEQLLEHSENV 99
           GG  AR   R  W  ++LR      +  L  +    LKEKNM + ++ + HSEN+
Sbjct: 72  GGSGARCLGRS-WKASELRLKSWDDLQKLWYV---LLKEKNMLMSQRQMLHSENM 122


>03_06_0617 -
           35124114-35124148,35124243-35124335,35124415-35124919,
           35125039-35125238,35125514-35125604,35125699-35126769
          Length = 664

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 83  EKNMTLEEQLLEHSENVVESDTCATPTC 110
           E+N      +  H EN+V SDT A PTC
Sbjct: 132 EENNDDVSHVATHKENMVVSDTQAPPTC 159


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,993,900
Number of Sequences: 37544
Number of extensions: 301516
Number of successful extensions: 788
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 783
Number of HSP's gapped (non-prelim): 8
length of query: 295
length of database: 14,793,348
effective HSP length: 82
effective length of query: 213
effective length of database: 11,714,740
effective search space: 2495239620
effective search space used: 2495239620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)