GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000176-TA|BGIBMGA000176-PA|undefined
         (295 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                 106   2e-23
SB_43149| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.37 
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)                       33   0.37 
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         29   6.0  
SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)              29   6.0  

>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score =  106 bits (254), Expect = 2e-23
 Identities = 43/100 (43%), Positives = 72/100 (72%)

Query: 172 LRMVDKIATNKYFQQVTDYKYVKRAMEGLSNTDIKLHLEIQGLEGRLSFNLPPPPHDRVW 231
           + +++++A +K+ ++  + K VK A E  SN  I L +E+Q ++G L+ N+PPPP +R+W
Sbjct: 839 ISVIERLAKSKWVKKAAETKIVKSAAEKFSNLPIILSVEVQTVKGTLAINIPPPPTNRLW 898

Query: 232 IGFRTNPQLVLKARPAVGARTLRFTHISNWIEQKLSKEFE 271
            GFR NP L + ARP +GAR ++ TH+++WIE+KL +EF+
Sbjct: 899 YGFRGNPMLFVSARPKLGARQVKLTHVTDWIEKKLKQEFK 938


>SB_43149| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 226 PHDRVWIGFRTNPQLVLKARPAVGARTLRFTHISNWIEQKLSKEFE-KVLVLPNMEDIII 284
           PH ++  G+RTNPQ+ L+A P+ G +T     +S   E+   KE    V+ L    + II
Sbjct: 19  PHQKLLPGYRTNPQINLQASPS-GGKTSSDNVLSAIAERLNMKERRGSVIELTKQLNGII 77

Query: 285 DI 286
           D+
Sbjct: 78  DL 79


>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
          Length = 2065

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)

Query: 191  KYVKRAMEGLSNTDIK--LHLEIQGLEGRLSFNLPPPPHDRVWIGFRTNPQLVLKARPAV 248
            K   R  EGL+NT ++  LH+    LE R   +LPP P D V      +  L LK RP+V
Sbjct: 1905 KSESRTSEGLTNTRMQALLHIMSLVLETRRQAHLPPSPGDEV-----HDSILTLKCRPSV 1959


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)

Query: 200  LSNTDIKLHLEIQGLEGRLSFNLPPPPHDRVWIGFR---TNPQ 239
            L N+  +L+ E+       +   PPPP+ R W G R   T+PQ
Sbjct: 1369 LLNSTRRLYPEVNEFSSATTPTSPPPPNPRPWGGLRAGVTSPQ 1411


>SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)
          Length = 339

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 175 VDKIATNKYFQQVTDYKYVKRAMEGLSNTDIKLHLEIQGLEGRLSFNLPPPPHDRVWIGF 234
           V  ++T+ + + ++   +V+     LS +   LHL  Q     L+    PPP + V    
Sbjct: 211 VRHLSTSSHVRHLSTSSHVRH----LSTSSHVLHLSTQSCPPPLNLQSCPPPLNSVMFAT 266

Query: 235 RTNPQLVLKARPAVGARTLRFTHI 258
              P +   ++P + + T + +H+
Sbjct: 267 SQPPVMFATSQPPLMSATSQLSHV 290


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,805,657
Number of Sequences: 59808
Number of extensions: 322947
Number of successful extensions: 725
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 5
length of query: 295
length of database: 16,821,457
effective HSP length: 82
effective length of query: 213
effective length of database: 11,917,201
effective search space: 2538363813
effective search space used: 2538363813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)