GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000176-TA|BGIBMGA000176-PA|undefined
         (295 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical pr...   109   2e-24
U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical pr...   109   2e-24
Z74039-1|CAA98503.1|  451|Caenorhabditis elegans Hypothetical pr...    31   0.74 
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    28   6.9  

>U41107-4|AAK73878.1|  876|Caenorhabditis elegans Hypothetical
           protein F55C12.5a protein.
          Length = 876

 Score =  109 bits (262), Expect = 2e-24
 Identities = 49/121 (40%), Positives = 79/121 (65%)

Query: 172 LRMVDKIATNKYFQQVTDYKYVKRAMEGLSNTDIKLHLEIQGLEGRLSFNLPPPPHDRVW 231
           L +V++ A +  FQ+    + V R +E +S T + L++E++ +EG ++ N+PPPP DR+W
Sbjct: 749 LSIVERAAQSSLFQKAAKLQAVARLIEDVSTTPLMLNVEVEEVEGPMTCNIPPPPSDRLW 808

Query: 232 IGFRTNPQLVLKARPAVGARTLRFTHISNWIEQKLSKEFEKVLVLPNMEDIIIDIMTPTP 291
             FR  P L L+A P VG R++  + +S WIE KL +  EK LV PNM+DII+ +++  P
Sbjct: 809 YAFRRRPILKLRAVPQVGDRSVDLSTVSEWIETKLRQVLEKNLVCPNMDDIILPVLSGNP 868

Query: 292 V 292
           +
Sbjct: 869 L 869



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 2   RDPVIIARVQNRIQRKLTTLKLPSFMSPLTVTSLSLAGACPALGGV-AARWDARGVWLDA 60
           RD   I +V+ +IQ KL T+ LP F+  L +  L    A P    V   + D  G W+D 
Sbjct: 608 RDDFWIRQVKQKIQSKLATIHLPYFIEKLELGELKFGTAAPKFTAVYTPKVDEWGTWVDF 667

Query: 61  DLRYDGGAHIALLTQINLMKLK 82
           +++Y GG  + L T INL+KL+
Sbjct: 668 EMKYKGGIRLVLQTSINLLKLQ 689


>U41107-3|AAK73879.1|  925|Caenorhabditis elegans Hypothetical
           protein F55C12.5b protein.
          Length = 925

 Score =  109 bits (262), Expect = 2e-24
 Identities = 49/121 (40%), Positives = 79/121 (65%)

Query: 172 LRMVDKIATNKYFQQVTDYKYVKRAMEGLSNTDIKLHLEIQGLEGRLSFNLPPPPHDRVW 231
           L +V++ A +  FQ+    + V R +E +S T + L++E++ +EG ++ N+PPPP DR+W
Sbjct: 798 LSIVERAAQSSLFQKAAKLQAVARLIEDVSTTPLMLNVEVEEVEGPMTCNIPPPPSDRLW 857

Query: 232 IGFRTNPQLVLKARPAVGARTLRFTHISNWIEQKLSKEFEKVLVLPNMEDIIIDIMTPTP 291
             FR  P L L+A P VG R++  + +S WIE KL +  EK LV PNM+DII+ +++  P
Sbjct: 858 YAFRRRPILKLRAVPQVGDRSVDLSTVSEWIETKLRQVLEKNLVCPNMDDIILPVLSGNP 917

Query: 292 V 292
           +
Sbjct: 918 L 918



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 2   RDPVIIARVQNRIQRKLTTLKLPSFMSPLTVTSLSLAGACPALGGV-AARWDARGVWLDA 60
           RD   I +V+ +IQ KL T+ LP F+  L +  L    A P    V   + D  G W+D 
Sbjct: 657 RDDFWIRQVKQKIQSKLATIHLPYFIEKLELGELKFGTAAPKFTAVYTPKVDEWGTWVDF 716

Query: 61  DLRYDGGAHIALLTQINLMKLK 82
           +++Y GG  + L T INL+KL+
Sbjct: 717 EMKYKGGIRLVLQTSINLLKLQ 738


>Z74039-1|CAA98503.1|  451|Caenorhabditis elegans Hypothetical
           protein K03B8.1 protein.
          Length = 451

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 57  WLDADLRYDGGAHIALLTQINLMKLKEKNMTLEEQLLEHSENVVESDTCAT 107
           W +A + Y      + L Q+  +KLK+ + T++ +L++ + N + S TC T
Sbjct: 80  WSNAKVFYCNADSFSKL-QLKKLKLKKNSDTVKRKLMKFAMNFISSQTCVT 129


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 88  LEEQLLEHSENVVESDTCATPTCGAFSEKQLRKRKPAI 125
           + E   E ++   E  T ATP  GA S K+   R+PA+
Sbjct: 865 MSEAPSETNDGFTEPSTPATPLMGATSSKKKSYRRPAV 902


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,555,314
Number of Sequences: 27539
Number of extensions: 240722
Number of successful extensions: 501
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 492
Number of HSP's gapped (non-prelim): 7
length of query: 295
length of database: 12,573,161
effective HSP length: 81
effective length of query: 214
effective length of database: 10,342,502
effective search space: 2213295428
effective search space used: 2213295428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)