Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000175-TA|BGIBMGA000175-PA|undefined
(455 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1304 + 35581172-35581345,35582504-35582748,35583148-355838... 59 8e-09
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786... 36 0.089
03_06_0517 + 34466743-34466879,34468478-34468588,34468997-344690... 31 2.5
03_05_0181 - 21621561-21621932,21622024-21622329 30 3.3
12_01_0234 + 1755704-1756120,1756203-1756313,1756923-1757063,175... 29 5.8
04_03_0658 + 18447986-18448117,18448204-18448317,18448388-184485... 29 5.8
03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820 29 7.7
>02_05_1304 +
35581172-35581345,35582504-35582748,35583148-35583829,
35583908-35584262,35584558-35584649,35584889-35585083,
35585167-35585840,35586134-35586224
Length = 835
Score = 58.8 bits (136), Expect = 8e-09
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Query: 251 VTDYKYVKRAM-EGLSNTDIKLHLEIQGLEGRLSFNLPPPPHDRVWIGFRTNPQLVLKAR 309
++ +K + ++ + +S + L ++I + G L ++ PPP D++W GF + P L
Sbjct: 500 ISGWKNIMHSIADHVSQVPLSLAIKISSVRGVLRVHVKPPPSDQLWYGFTSMPDLEWDIE 559
Query: 310 PAVGARTLRFTHISNWIEQKLSKEFEKVLVLPNMEDIIIDIM 351
++G R + +HI + I + LVLPN E I I M
Sbjct: 560 SSIGDRKITNSHIGSLIGNRFKASLRDSLVLPNCESISIPFM 601
>01_01_0994 -
7861310-7862119,7862378-7862498,7862718-7862901,
7862975-7863070,7863428-7863476,7863555-7863596,
7863684-7863836,7865631-7865705,7866462-7866587
Length = 551
Score = 35.5 bits (78), Expect = 0.089
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 293 RVWIGFRTNPQLVLKARPAVG--ARTLRFTHISNWIEQKLSKEFEKVLVLPNMEDIIIDI 350
RV + F P + +P +G F IS W+++ + F + LV PNM I ++
Sbjct: 83 RVRLCFVEPPYFQMTVKPLIGHGLDVTEFPGISGWLDKLMDTAFGQTLVEPNMLVIDVEK 142
Query: 351 MTPTPVQFEFRRLSTAIAEANAASSDSSGPDDKSNDTNENKD 392
TP ++ + A G D K +D N D
Sbjct: 143 FVSTPSDNDWFSIEERPPVAYVKLEILEGSDMKPSDMNGLSD 184
>03_06_0517 +
34466743-34466879,34468478-34468588,34468997-34469079,
34469287-34469404,34469503-34469714,34470167-34470651,
34470731-34470801,34470898-34470955,34471161-34471192,
34471193-34471449,34471820-34471974,34472353-34472636,
34472725-34472842,34473574-34473756,34473848-34474162
Length = 872
Score = 30.7 bits (66), Expect = 2.5
Identities = 16/68 (23%), Positives = 32/68 (47%)
Query: 371 NAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAFAKTSNKSDTGSEGVTISSLGQ 430
N +S +G + + T EN ++ + + EK A + ++ SDTG+ +
Sbjct: 260 NNLNSTDAGNNSSLSTTTENASHVQRRLLQTDEKSNQAGSSETDASDTGTAKAATVENSE 319
Query: 431 TLPSDSEA 438
L +D++A
Sbjct: 320 PLEADADA 327
>03_05_0181 - 21621561-21621932,21622024-21622329
Length = 225
Score = 30.3 bits (65), Expect = 3.3
Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 12 DDMD-EDIDENELSKIKEFLEEAEMETGAD-GTAEGEWXXXXXXXXXXXXX-------LY 62
DD + E+I LS+ E+LE+ E + G AEG L
Sbjct: 10 DDRECEEITATALSEATEYLEDPEPPSPEQVGWAEGAVISAQSAADNMASYVLDLRRGLA 69
Query: 63 LFARTGRDKHEWFRRLSTAIAEANAASSDSSGPDDKSND-TNENKDGIELAVYKFSE 118
+FA TGR + R+ + A A+A A+ G D +D K G+ + KF +
Sbjct: 70 VFAGTGRPEEAVLRK-NVAWADARRAALAGEGAQDSGDDAVRSRKAGLLDSAIKFED 125
>12_01_0234 +
1755704-1756120,1756203-1756313,1756923-1757063,
1757142-1757312,1757412-1757616,1757738-1757910,
1758021-1758103,1758250-1758389,1758569-1758645,
1758711-1758810,1759978-1760606
Length = 748
Score = 29.5 bits (63), Expect = 5.8
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 2 EVSKSATSTKDDMDEDIDENELS--KIKEFLEEAEMETGADGTAEGE 46
E S+ DD +E+++E E+ +I+E +EE E+E D E E
Sbjct: 17 EKSEECLEFDDDEEEEVEEEEIEYEEIEEEIEEEEVEEDEDVVEEVE 63
>04_03_0658 +
18447986-18448117,18448204-18448317,18448388-18448507,
18448589-18449215,18449289-18449462,18449545-18449809,
18449889-18449959,18450043-18450145,18450221-18450280,
18450533-18450744,18450830-18450901,18451446-18451502,
18451598-18451882,18452359-18452371,18452396-18452463,
18452649-18452747,18452836-18452967,18453038-18453141,
18453234-18453423,18453519-18453524
Length = 967
Score = 29.5 bits (63), Expect = 5.8
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 6 SATSTKDDMDEDIDENELSKIKEFLEEAEM 35
SA S KD+MD DID+N + KE ++ +
Sbjct: 496 SAHSPKDNMDNDIDDNRNANNKEEIDNVHV 525
>03_02_0256 + 6899424-6899876,6900084-6900163,6900475-6900820
Length = 292
Score = 29.1 bits (62), Expect = 7.7
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 243 ATNKYFQQVTDYKYVKRAMEGLSNTDIKLHLEIQGLEGRLSFNLPPP 289
A K Q D +++KR E L+ + +L E+Q L L F PPP
Sbjct: 177 ARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRA-LKFAPPPP 222
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.130 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,803,743
Number of Sequences: 37544
Number of extensions: 463946
Number of successful extensions: 1323
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1318
Number of HSP's gapped (non-prelim): 9
length of query: 455
length of database: 14,793,348
effective HSP length: 84
effective length of query: 371
effective length of database: 11,639,652
effective search space: 4318310892
effective search space used: 4318310892
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)
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