Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000175-TA|BGIBMGA000175-PA|undefined
(455 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 106 4e-23
SB_15799| Best HMM Match : PH (HMM E-Value=0.76) 34 0.21
SB_43149| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.63
SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0) 33 0.63
SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003) 31 1.5
SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6) 31 1.5
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.9
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.5
SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7) 30 4.4
SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09) 29 5.9
SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7
SB_36754| Best HMM Match : DUF308 (HMM E-Value=1.1) 29 7.7
SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05) 29 7.7
SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7
SB_45140| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 29 7.7
SB_43802| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7
SB_35674| Best HMM Match : SH2 (HMM E-Value=0) 29 7.7
SB_28851| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.7
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 106 bits (254), Expect = 4e-23
Identities = 43/100 (43%), Positives = 72/100 (72%)
Query: 236 LRMVDKIATNKYFQQVTDYKYVKRAMEGLSNTDIKLHLEIQGLEGRLSFNLPPPPHDRVW 295
+ +++++A +K+ ++ + K VK A E SN I L +E+Q ++G L+ N+PPPP +R+W
Sbjct: 839 ISVIERLAKSKWVKKAAETKIVKSAAEKFSNLPIILSVEVQTVKGTLAINIPPPPTNRLW 898
Query: 296 IGFRTNPQLVLKARPAVGARTLRFTHISNWIEQKLSKEFE 335
GFR NP L + ARP +GAR ++ TH+++WIE+KL +EF+
Sbjct: 899 YGFRGNPMLFVSARPKLGARQVKLTHVTDWIEKKLKQEFK 938
Score = 34.3 bits (75), Expect = 0.21
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 61 LYLFARTGRDKHEWFRRLS 79
LYLFARTGR+K EW++ S
Sbjct: 636 LYLFARTGREKEEWYQYFS 654
>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
Length = 836
Score = 34.3 bits (75), Expect = 0.21
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 61 LYLFARTGRDKHEWFRRLS 79
LYLFARTGR+K EW++ S
Sbjct: 762 LYLFARTGREKEEWYQYFS 780
>SB_43149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 215
Score = 32.7 bits (71), Expect = 0.63
Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 290 PHDRVWIGFRTNPQLVLKARPAVGARTLRFTHISNWIEQKLSKEFE-KVLVLPNMEDIII 348
PH ++ G+RTNPQ+ L+A P+ G +T +S E+ KE V+ L + II
Sbjct: 19 PHQKLLPGYRTNPQINLQASPS-GGKTSSDNVLSAIAERLNMKERRGSVIELTKQLNGII 77
Query: 349 DI 350
D+
Sbjct: 78 DL 79
>SB_43853| Best HMM Match : AAA_5 (HMM E-Value=0)
Length = 2065
Score = 32.7 bits (71), Expect = 0.63
Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 255 KYVKRAMEGLSNTDIK--LHLEIQGLEGRLSFNLPPPPHDRVWIGFRTNPQLVLKARPAV 312
K R EGL+NT ++ LH+ LE R +LPP P D V + L LK RP+V
Sbjct: 1905 KSESRTSEGLTNTRMQALLHIMSLVLETRRQAHLPPSPGDEV-----HDSILTLKCRPSV 1959
>SB_6548| Best HMM Match : Helicase_C (HMM E-Value=0.003)
Length = 1063
Score = 31.5 bits (68), Expect = 1.5
Identities = 19/70 (27%), Positives = 29/70 (41%)
Query: 364 STAIAEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAFAKTSNKSDTGSEGV 423
ST + + S + EN DG V F+++D + +T +K T G
Sbjct: 691 STGLEGRSVVYGTSPPANFLDTQAQENADGASEVVTSFADEDCKSTDQTGSKIVTSFAGE 750
Query: 424 TISSLGQTLP 433
S+GQT P
Sbjct: 751 GCKSIGQTSP 760
>SB_4355| Best HMM Match : DUF1421 (HMM E-Value=6.6)
Length = 642
Score = 31.5 bits (68), Expect = 1.5
Identities = 19/70 (27%), Positives = 29/70 (41%)
Query: 364 STAIAEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAFAKTSNKSDTGSEGV 423
ST + + S + EN DG V F+++D + +T +K T G
Sbjct: 546 STGLEGRSVVYGTSPPANFLDTQAQENADGASEVVTSFADEDCKSTDQTGSKIVTSFAGE 605
Query: 424 TISSLGQTLP 433
S+GQT P
Sbjct: 606 GCKSIGQTSP 615
>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1109
Score = 31.1 bits (67), Expect = 1.9
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 367 IAEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAFAKTSNKSDTGSEG 422
I A + +SSG DD+S +++E ++ E AV K A S+ S+ SEG
Sbjct: 201 IKTAEESDDNSSGSDDESEESSEEEENQESAV----NKQETATQDESSDSEESSEG 252
Score = 29.1 bits (62), Expect = 7.7
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 82 IAEANAASSDSSGPDDKSNDTNENKDGIELAVYK--FSEKDTVAFAKTSPKSPSPDCECR 139
I A + +SSG DD+S +++E ++ E AV K + +D + ++ S + S + E
Sbjct: 201 IKTAEESDDNSSGSDDESEESSEEEENQESAVNKQETATQDESSDSEESSEGNSEEDESE 260
Query: 140 TLPAE 144
T E
Sbjct: 261 TSEEE 265
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 30.7 bits (66), Expect = 2.5
Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
Query: 346 IIIDIMTPTPVQFEFRRLSTAIAEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKD 405
I+ DI T TP E + +A ++AA + D + KD K EKD
Sbjct: 1266 ILGDISTKTPDSSEEPKQKN-MAASDAAKNKQEVMDKSEASNGKQKDKSLSEASKVKEKD 1324
Query: 406 TVAFAKTSNKSDTGSEGVTISSLGQTLPSDSEAYEKNFWPYLIKIIQVR 454
+ K S++ T + G + S+S Y ++++ L ++Q R
Sbjct: 1325 MPSNTKLSSEPATNNNGQVLERPPPRWSSNS-PYSESYYNSLAVVLQRR 1372
>SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)
Length = 577
Score = 29.9 bits (64), Expect = 4.4
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 362 RLSTAIAEANAASSDSSGPDDKSNDTNE--NKDGIELAVYKFSEKDTVAFAKTSNKSDTG 419
R T A ++ASS SG D S T+E K G EL + + A + N ++ G
Sbjct: 315 RTGTFSAPTSSASSSVSGDDSDSGATDEMFEKAGEELLEMQMRAEQQGAKEGSDNMAENG 374
Query: 420 SEGVTISSLGQTLPSDSEAYEK 441
S+ G L +E EK
Sbjct: 375 SK--MFGENGHNLAKSTERNEK 394
>SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09)
Length = 868
Score = 29.5 bits (63), Expect = 5.9
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 70 DKHEWFRRLSTAI-AEANAASSDSSGPDDKSNDTNENKDGIELAVYK-FSE 118
DKH+ F+ ++ A+ A S S G DD +D N++ + A Y F+E
Sbjct: 787 DKHKGFQLINEALKIRHRYAKSSSMGDDDMGDDEKRNREVMLAACYNDFAE 837
>SB_42896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 994
Score = 29.5 bits (63), Expect = 5.9
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 7 ATSTKDDMDEDIDENELSKIKEFLEE 32
+T+T+D M E +D N+L++ KE EE
Sbjct: 648 STATEDQMQEVVDSNKLAEKKEVTEE 673
>SB_39569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 29.1 bits (62), Expect = 7.7
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 70 DKHEWFRRLSTAIAEANAASSDSSGPDDKSN-DTNENKDGIELAVYKFSEKDTVAFAK 126
DK + L + N+ SSDS P KSN T + K L + KD + AK
Sbjct: 437 DKKRYSSALEMSSGPHNSLSSDSHEPKSKSNISTFDKKQKSRLRKFSKGRKDDILKAK 494
>SB_36754| Best HMM Match : DUF308 (HMM E-Value=1.1)
Length = 179
Score = 29.1 bits (62), Expect = 7.7
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 68 GRDKHEWFRRLSTAIAEANAASSDSSGPDDKSNDTNENKD 107
GR+ E FR +S +A +A SD+ D+ ND +++ D
Sbjct: 46 GRNIREGFRNIS--LASGSAVGSDNEDDDEDENDGDDDDD 83
>SB_36445| Best HMM Match : ASC (HMM E-Value=5.6e-05)
Length = 897
Score = 29.1 bits (62), Expect = 7.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 6 SATSTKDDMDEDIDENELSKIKEFLEEA 33
+ + KDD+D+ IDE + +IK+ ++EA
Sbjct: 676 TTAAPKDDLDKKIDEQKHRQIKKLMQEA 703
>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 7.7
Identities = 18/76 (23%), Positives = 35/76 (46%)
Query: 363 LSTAIAEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAFAKTSNKSDTGSEG 422
++ A+A A A SS SS SN+++ + + S + + + +S+ S + S
Sbjct: 34 VAVAVAVAIAVSSSSSRSSSNSNNSSNSSSSSSSSSNSSSSSSSSSSSSSSSSSSSNSSS 93
Query: 423 VTISSLGQTLPSDSEA 438
+ SS + S S +
Sbjct: 94 SSSSSSSSSSSSSSSS 109
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 80 TAIAEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAFAKTSPKSPSPD 135
T A ++ + D+K++DT E K+G+ K + D V K KSP +
Sbjct: 1689 TGNATVDSTKPTAEAKDEKTDDTKETKEGL-----KGDKSDPVTTPKAEEKSPKAE 1739
>SB_45140| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 868
Score = 29.1 bits (62), Expect = 7.7
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 83 AEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAFAKTSPKSPSPDCECR 139
A +AA+SDSSG D +D N + DGI + + ++S S S + + R
Sbjct: 657 ALVDAATSDSSG-DSSDSDDNHDLDGINSVLTDDDDGPPELVTESSAASDSDEIDAR 712
>SB_43802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 29.1 bits (62), Expect = 7.7
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
Query: 349 DIMTPTPVQFEFRRLSTAIAEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVA 408
DI+ PT + L + IA +SDS ++ND N NK+ + S +
Sbjct: 4 DIIGPTLIH---AALGSTIAVKGRRNSDSGNNSSRNNDKNRNKNSSSSS--SSSSSSSSN 58
Query: 409 FAKTSNKSDTGSE 421
+ +N SD S+
Sbjct: 59 YDNNNNNSDNKSD 71
>SB_35674| Best HMM Match : SH2 (HMM E-Value=0)
Length = 871
Score = 29.1 bits (62), Expect = 7.7
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 80 TAIAEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAFAKTSPKSPSPD 135
T A ++ + D+K++DT E K+G+ K + D V K KSP +
Sbjct: 268 TGNATVDSTKPTAEAKDEKTDDTKETKEGL-----KGDKSDPVTTPKAEEKSPKAE 318
>SB_28851| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 29.1 bits (62), Expect = 7.7
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 341 PNMEDIII-DIMTPTPVQFEFRRLSTAIAEANAASSDSSGPDDKSNDTNENKDGIELAVY 399
P+ D I+ DI P V+ + E S D G D D DG+E +
Sbjct: 77 PSKTDTIVQDIWVPPDVESDHDEDYVPDLEGFEGSEDEKGVAD---DMEMESDGLETSES 133
Query: 400 KFSEKDTVAFAKTSNKSDTGSEGVTISSLGQTLPSDSE 437
K K K +NK T +E + + DSE
Sbjct: 134 KKELKSDTKSVKKANKRKTMNESESTKTKKPKKAKDSE 171
>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2722
Score = 29.1 bits (62), Expect = 7.7
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 5/120 (4%)
Query: 305 VLKARPAVGARTLRFTHISNW----IEQKLSKEFEKVLVLPNMEDIIIDIMTPTPVQFEF 360
V++A P V R +FT ++ E SK+ K+ ++ N EDI T + +F
Sbjct: 1849 VIEASPEV-ERKPKFTLVTGASGRVYENDHSKDRRKICLVENTEDIEAINDTSQCFEAKF 1907
Query: 361 RRLSTAIAEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAFAKTSNKSDTGS 420
+L + + A +G D D E D K E D + ++ + D GS
Sbjct: 1908 TKLKSKPFRESVAKRQGNGNDVLFQDRLEASDLDARLDVKTPEADFIPSSQNGARDDLGS 1967
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.130 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,712,403
Number of Sequences: 59808
Number of extensions: 553416
Number of successful extensions: 1920
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1902
Number of HSP's gapped (non-prelim): 36
length of query: 455
length of database: 16,821,457
effective HSP length: 85
effective length of query: 370
effective length of database: 11,737,777
effective search space: 4342977490
effective search space used: 4342977490
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 62 (29.1 bits)
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