GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000175-TA|BGIBMGA000175-PA|undefined
         (455 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   9.3  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   9.3  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 146 TWVNTALARVAYDVMRDPVIIARVQNRIQRKLNTLK 181
           TW   +  R   +  R+P II+ + NR     N  K
Sbjct: 62  TWKERSRDRTERERSREPKIISSLSNRTIHNNNNYK 97


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 249 QQVTDYKYVKRAMEGLSNTDIKLHLEIQGLEGRLSF 284
           + +++Y Y     + L N D K+ L  +  E RL +
Sbjct: 3   RNISNYSYHDEKFKQLRNEDNKIDLRSRTKEERLQY 38


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.130    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,313
Number of Sequences: 429
Number of extensions: 4673
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 2
length of query: 455
length of database: 140,377
effective HSP length: 60
effective length of query: 395
effective length of database: 114,637
effective search space: 45281615
effective search space used: 45281615
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)