Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000175-TA|BGIBMGA000175-PA|undefined
(455 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73200.1 68414.m08471 expressed protein 63 3e-10
At1g17820.1 68414.m02206 expressed protein 60 4e-09
At1g53590.1 68414.m06088 C2 domain-containing protein 34 0.23
At5g55430.1 68418.m06905 hypothetical protein 31 1.2
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 31 1.2
At3g14590.1 68416.m01847 C2 domain-containing protein low simila... 31 1.2
At3g16460.2 68416.m02097 jacalin lectin family protein contains ... 30 3.7
At3g16460.1 68416.m02098 jacalin lectin family protein contains ... 30 3.7
At1g12230.1 68414.m01415 transaldolase, putative similar to Swis... 29 6.4
At3g47600.1 68416.m05182 myb family transcription factor (MYB94)... 29 8.5
At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family... 29 8.5
At2g23310.2 68415.m02783 RER1C protein identical to SP|Q9ZWI7 RE... 29 8.5
At2g23310.1 68415.m02782 RER1C protein identical to SP|Q9ZWI7 RE... 29 8.5
At1g71270.1 68414.m08225 Vps52/Sac2 family protein similar to SP... 29 8.5
At1g28240.1 68414.m03466 expressed protein 29 8.5
>At1g73200.1 68414.m08471 expressed protein
Length = 779
Score = 63.3 bits (147), Expect = 3e-10
Identities = 28/96 (29%), Positives = 49/96 (51%)
Query: 257 VKRAMEGLSNTDIKLHLEIQGLEGRLSFNLPPPPHDRVWIGFRTNPQLVLKARPAVGART 316
+K +E +S I L + + L G L ++ PPP D++W GF + P + +VG
Sbjct: 508 LKNIVEQVSQVPITLSIGVSSLRGTLCVHMKPPPSDQLWFGFTSMPDIEFNLVSSVGEHK 567
Query: 317 LRFTHISNWIEQKLSKEFEKVLVLPNMEDIIIDIMT 352
+ +H++ ++ + V+VLPN E + I MT
Sbjct: 568 ITNSHVAMFLVNRFKTAIRDVMVLPNCESVTIPWMT 603
Score = 29.5 bits (63), Expect = 4.8
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 9/95 (9%)
Query: 90 SDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAFAKT---SPKSPSPDCECRTLPAELT 146
S S+G KS +D I E D +++ S + D E ++
Sbjct: 282 SQSTGSSGKSTSARRMQDNIP------EETDVQVISRSWSHSSHASDVDSEDKSFDEGTL 335
Query: 147 WVNTALARVAYDVMRDPVIIARVQNRIQRKLNTLK 181
+N L+R+ +DV ++ V+ V+ RIQR ++ ++
Sbjct: 336 ALNVVLSRLFFDVKQNTVLKNLVRERIQRIMSNMR 370
>At1g17820.1 68414.m02206 expressed protein
Length = 803
Score = 59.7 bits (138), Expect = 4e-09
Identities = 26/95 (27%), Positives = 47/95 (49%)
Query: 257 VKRAMEGLSNTDIKLHLEIQGLEGRLSFNLPPPPHDRVWIGFRTNPQLVLKARPAVGART 316
+K E +S I L + + L G L ++ PPP D++W GF + P + +VG
Sbjct: 505 LKTIAEQVSQVPISLSIRVSSLRGTLRVHMKPPPSDQLWFGFTSMPDIEFDLASSVGEHK 564
Query: 317 LRFTHISNWIEQKLSKEFEKVLVLPNMEDIIIDIM 351
+ +H++ ++ + + +VLPN E + I M
Sbjct: 565 ITNSHVAMFLINRFKTAIREAVVLPNCESLTIPWM 599
>At1g53590.1 68414.m06088 C2 domain-containing protein
Length = 751
Score = 33.9 bits (74), Expect = 0.23
Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 16/147 (10%)
Query: 270 KLHLEIQGLEGRL----SFNLPPPPHDRVWIGFRTNPQLVLKARPAV--GARTLRFTHIS 323
KLHL +EG++ F P R+ + F P + +P G I+
Sbjct: 177 KLHLTGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPIFTHGLDVAVLPGIA 236
Query: 324 NWIEQKLSKEFEKVLVLPNMEDIIIDI---MTPTPVQFEFRRLSTAIAEANAASSDSSGP 380
W+++ LS FE+ LV PNM +++D+ ++PT + F +A ++S
Sbjct: 237 GWLDKLLSIAFEQTLVQPNM--LVVDMEKFVSPTSENWFFVDEKEPVAHVLVEVFEAS-- 292
Query: 381 DDKSNDTNENKDGI---ELAVYKFSEK 404
D K +D N D +L Y+F K
Sbjct: 293 DLKPSDLNGLADPYVKGKLGAYRFKTK 319
>At5g55430.1 68418.m06905 hypothetical protein
Length = 149
Score = 31.5 bits (68), Expect = 1.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 15 DEDIDENELSKIKEFLEEAEMETGADGTAEGEW 47
D+D++E E K +E +EE E E + EGEW
Sbjct: 15 DDDLEEEEDEKEEEEVEEEEEEEEEEEDEEGEW 47
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 31.5 bits (68), Expect = 1.2
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 12 DDMDEDIDENELSKIKEFLEEAEMETGADGTAEGE 46
DD D + E +S +E LEEA ETG T E
Sbjct: 483 DDEDMKVSETHVSVERELLEEAHQETGEKSTVADE 517
>At3g14590.1 68416.m01847 C2 domain-containing protein low
similarity to SP|Q16974 Calcium-dependent protein kinase
C (EC 2.7.1.-) {Aplysia californica}; contains Pfam
profile PF00168: C2 domain
Length = 737
Score = 31.5 bits (68), Expect = 1.2
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 270 KLHLEIQGLEGRL----SFNLPPPPHDRVWIGFRTNPQLVLKARPAV--GARTLRFTHIS 323
KLHL +EG++ F P R+ + F P + +P G I+
Sbjct: 177 KLHLTGMHVEGKVLIGVKFLRRWPFLGRLRVCFAEPPYFQMTVKPITTHGLDVAVLPGIA 236
Query: 324 NWIEQKLSKEFEKVLVLPNMEDIIIDI 350
W+++ LS FE+ LV PNM +++D+
Sbjct: 237 GWLDKLLSVAFEQTLVEPNM--LVVDM 261
>At3g16460.2 68416.m02097 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 647
Score = 29.9 bits (64), Expect = 3.7
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 354 TPVQFEFRRLSTAIAEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAFA-KT 412
TPV +L+ E A D S D K + +DG+ +++ V F +
Sbjct: 400 TPVPSTPLKLTAEGGETGAVWDDGSHDDVKKVYVGQGQDGVAAVKFEYKNGSQVVFGDER 459
Query: 413 SNKSDTGSEGVTISSLGQTLPSDSEAYEKNF 443
++ G E + S + + S YEKNF
Sbjct: 460 GTRTLLGFEEFELES-DEYITSVEGYYEKNF 489
>At3g16460.1 68416.m02098 jacalin lectin family protein contains
Pfam profile: PF01419 jacalin-like lectin domain;
similar to myrosinase binding protein [Brassica napus]
GI:1711296, GI:1655824, myrosinase-binding protein
homolog [Arabidopsis thaliana] GI:2997767; contains Pfam
profile PF01419 jacalin-like lectin family
Length = 705
Score = 29.9 bits (64), Expect = 3.7
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Query: 354 TPVQFEFRRLSTAIAEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAFA-KT 412
TPV +L+ E A D S D K + +DG+ +++ V F +
Sbjct: 400 TPVPSTPLKLTAEGGETGAVWDDGSHDDVKKVYVGQGQDGVAAVKFEYKNGSQVVFGDER 459
Query: 413 SNKSDTGSEGVTISSLGQTLPSDSEAYEKNF 443
++ G E + S + + S YEKNF
Sbjct: 460 GTRTLLGFEEFELES-DEYITSVEGYYEKNF 489
>At1g12230.1 68414.m01415 transaldolase, putative similar to
Swiss-Prot:P30148 transaldolase B (EC 2.2.1.2)
[Escherichia coli O157:H7]
Length = 405
Score = 29.1 bits (62), Expect = 6.4
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 351 MTPTP-VQFEFRRLSTAIAEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAF 409
+TP P V F RR +I A++S SS P S + EN + ++ + DTV F
Sbjct: 31 VTPLPAVNFSLRR---SIPRILASASSSSSPASSSLEAGENNELNAVSAFSEIVPDTVVF 87
>At3g47600.1 68416.m05182 myb family transcription factor (MYB94)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB94) GI:3941527
Length = 333
Score = 28.7 bits (61), Expect = 8.5
Identities = 19/64 (29%), Positives = 24/64 (37%)
Query: 71 KHEWFRRLSTAIAEANAASSDSSGPDDKSNDTNENKDGIELAVYKFSEKDTVAFAKTSPK 130
K +W RRL T I A A D+ D N TN + + S T T
Sbjct: 153 KGQWERRLQTDINMAKQALCDALSIDKPQNPTNFSIPDLGYGPSSSSSSTTTTTTTTRNT 212
Query: 131 SPSP 134
+P P
Sbjct: 213 NPYP 216
>At2g33490.1 68415.m04105 hydroxyproline-rich glycoprotein family
protein Common family member:At3g26910 [Arabidopsis
thaliana]
Length = 623
Score = 28.7 bits (61), Expect = 8.5
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 376 DSSGPDD---KSNDTNENKDGIELAV-YKFSEKDTVAFAKTSNKSDTGSEGVTISSLG 429
D G D+ ND +E D EL+ Y+ ++KD A + S+ G+ +T +G
Sbjct: 245 DDDGDDEIENNENDGSEVHDDGELSFEYRVNDKDQDADSSAGGSSELGNSDITFPQIG 302
>At2g23310.2 68415.m02783 RER1C protein identical to SP|Q9ZWI7 RER1C
protein (AtRER1C) {Arabidopsis thaliana}
Length = 211
Score = 28.7 bits (61), Expect = 8.5
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 79 STAIAEANAASSDSSGPDD--KSNDTNENKDGIELAVYKFSEKDTVAFAKTSP 129
+TA+ AA++ ++ DD +S+D++ D + ++ FS++ KT P
Sbjct: 5 ATAVVPPAAAATTATATDDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVP 57
>At2g23310.1 68415.m02782 RER1C protein identical to SP|Q9ZWI7 RER1C
protein (AtRER1C) {Arabidopsis thaliana}
Length = 212
Score = 28.7 bits (61), Expect = 8.5
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 79 STAIAEANAASSDSSGPDD--KSNDTNENKDGIELAVYKFSEKDTVAFAKTSP 129
+TA+ AA++ ++ DD +S+D++ D + ++ FS++ KT P
Sbjct: 5 ATAVVPPAAAATTATATDDNLQSSDSSSPADAVNRLIHAFSQRQQHLLDKTVP 57
>At1g71270.1 68414.m08225 Vps52/Sac2 family protein similar to
SP|P39904 SAC2 protein {Saccharomyces cerevisiae};
contains Pfam profile PF04129: Vps52 / Sac2 family
Length = 707
Score = 28.7 bits (61), Expect = 8.5
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 2/87 (2%)
Query: 327 EQKLSKEFEKVLVLPNMEDIIID--IMTPTPVQFEFRRLSTAIAEANAASSDSSGPDDKS 384
E KL+K E ++V P M D+I+D + E EA+ A S D
Sbjct: 157 ESKLAKFVEDIIVPPKMIDVIVDGEVNEEYMKTLEILSKKLKFVEADQAVKSSKALKDVE 216
Query: 385 NDTNENKDGIELAVYKFSEKDTVAFAK 411
+ + + VY F + +A K
Sbjct: 217 PELEKLRQKAISKVYDFIVQKLIALRK 243
>At1g28240.1 68414.m03466 expressed protein
Length = 581
Score = 28.7 bits (61), Expect = 8.5
Identities = 15/30 (50%), Positives = 15/30 (50%)
Query: 283 SFNLPPPPHDRVWIGFRTNPQLVLKARPAV 312
SF LPPPP DR G R P L AV
Sbjct: 150 SFTLPPPPADRKRTGPRPCPVCYLPVEEAV 179
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.313 0.130 0.370
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,742,674
Number of Sequences: 28952
Number of extensions: 389055
Number of successful extensions: 1209
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1193
Number of HSP's gapped (non-prelim): 25
length of query: 455
length of database: 12,070,560
effective HSP length: 83
effective length of query: 372
effective length of database: 9,667,544
effective search space: 3596326368
effective search space used: 3596326368
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
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