Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000174-TA|BGIBMGA000174-PA|undefined
         (573 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    28   0.15 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    28   0.20 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   1.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   5.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   5.7  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    23   5.7  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   5.7  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    23   5.7  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 0.15
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 85  PVDAKSDERPTPPKEVSSSPMKDYLNRLTKKNV-SDISQESKEGSNETWKIFHDFKFKIA 143
           P+  +++  P+PP       +K    +L   NV S  +QE +    +TWK+  D     +
Sbjct: 63  PLAWQANSPPSPPAPSELPALKS--RKLNNNNVVSSTNQEIRGPKRKTWKVEEDSPSPTS 120

Query: 144 QAVEDMKTRSGD 155
               ++K  S D
Sbjct: 121 SVSPEVKDSSRD 132


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 27.9 bits (59), Expect = 0.20
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 513 EKETTASDRKSSDAANEKKKETPETESAETNTSPEKKRKFVWRRREKR 560
           EK  T+   + +D     KKE  E E  E +TS + KR+   R  ++R
Sbjct: 849 EKSPTSDKAQEADGEVVVKKEVDEEERLENHTSVKIKREAEDRDEDER 896



 Score = 23.0 bits (47), Expect = 5.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 77  VEKTEDIKPVDAKSDERPTPPKEVSSSP 104
           +E  ED   +   S   P PP+E ++SP
Sbjct: 28  LEGDEDTGSMTPNSAASPAPPEEEAASP 55


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 1.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 351 LLGIWFFCFASNAKHW 366
           LLG+   C   NAKHW
Sbjct: 180 LLGVAMDCLKGNAKHW 195


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 131 TWKIFHDFKFKIAQAVEDMKTRSGDETKEKSVPRDNSISDSEEN 174
           T+K   +F   I   +   K  S  + K   V   N++ DS+ N
Sbjct: 423 TYKFPTNFDALIVNEMRSEKPESKKDKKGSQVDHKNNLGDSKNN 466


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 131 TWKIFHDFKFKIAQAVEDMKTRSGDETKEKSVPRDNSISDSEEN 174
           T+K   +F   I   +   K  S  + K   V   N++ DS+ N
Sbjct: 315 TYKFPTNFDALIVNEMRSEKPESKKDKKGSQVDHKNNLGDSKNN 358


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)

Query: 65  DKYFKSIRTEKLVEKTEDIK 84
           ++YFK +  EKL E  E+I+
Sbjct: 413 ERYFKGLDEEKLPESGENIE 432


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)

Query: 235 NLNNSDSMDVTKEPMSESMLDVESGIE 261
           N+N+  SM+ T  P ++  LD+ +G++
Sbjct: 423 NVNSPASMNQTPPPTAQMGLDMVTGLD 449


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.0 bits (47), Expect = 5.7
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 4/33 (12%)

Query: 319 KTYFFNFTMYLLTFLLLVNYMLFPNSNIWNGFL 351
           K + F F    L F++ V Y L+     W+ FL
Sbjct: 527 KNFCFGFITKQLIFMIFVTYQLY----CWSSFL 555


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.130    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,075
Number of Sequences: 317
Number of extensions: 5201
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 9
length of query: 573
length of database: 114,650
effective HSP length: 60
effective length of query: 513
effective length of database: 95,630
effective search space: 49058190
effective search space used: 49058190
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 46 (22.6 bits)