Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000173-TA|BGIBMGA000173-PA|IPR003123|Vacuolar sorting
protein 9, IPR002110|Ankyrin
         (896 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    29   0.19 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    26   1.3  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    24   4.0  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    24   4.0  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    24   4.0  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   7.0  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 28.7 bits (61), Expect = 0.19
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 784 CNILIFNRANVNCRNKKAQTP-LHLAAINNKTVVIRLLLDNGANINAI 830
           CN+L   +      NK  ++  + +  I +  V+ RLL DN AN N I
Sbjct: 126 CNVLTVFKIRYKDLNKALESSKISVGLIRDTAVLYRLLADNVANFNKI 173


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 1   MDGTYDEIVSENPFFLELKNEYANLFQHCLS-ESWIICVPR 40
           ++G Y+ I+   P++ E K  + N  +H LS     + VPR
Sbjct: 106 LNGIYEYIMRNFPYYRENKQGWQNSIRHNLSLNKCFVKVPR 146


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 351 SGALTGPPDPEAYYYYESNLTEEN 374
           +G+   PP P+  YY+   + ++N
Sbjct: 51  TGSEETPPSPQEVYYHHQTIPQDN 74


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 351 SGALTGPPDPEAYYYYESNLTEEN 374
           +G+   PP P+  YY+   + ++N
Sbjct: 51  TGSEETPPSPQEVYYHHQTIPQDN 74


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 7/24 (29%), Positives = 14/24 (58%)

Query: 351 SGALTGPPDPEAYYYYESNLTEEN 374
           +G+   PP P+  YY+   + ++N
Sbjct: 51  TGSEETPPSPQEVYYHHQTIPQDN 74


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 782 EFCNILIFNRANVNCRNKKAQTPLH 806
           +FC  LI+  A +N    KAQ PL+
Sbjct: 48  QFCTHLIYGYAGINAETFKAQ-PLN 71


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,327
Number of Sequences: 317
Number of extensions: 8626
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 6
length of query: 896
length of database: 114,650
effective HSP length: 63
effective length of query: 833
effective length of database: 94,679
effective search space: 78867607
effective search space used: 78867607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)