GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000173-TA|BGIBMGA000173-PA|IPR003123|Vacuolar sorting
protein 9, IPR002110|Ankyrin
         (896 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    26   1.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   3.6  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    24   4.8  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   6.3  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    24   6.3  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    24   6.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   6.3  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   8.3  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 744 CECQYCKRKTESCTDFDVNVC 764
           CEC+ C  KT+ C   D  +C
Sbjct: 435 CECKTCNSKTKCCFAQDDGLC 455


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 672 EKPTSLKLQNL-TLKCSDTNDASKTIENLKLIERILRA 708
           +KP S    +  T  CS      K +E++ +++R+L+A
Sbjct: 590 DKPASSSASSAPTSVCSSPRSEDKEVEDMPVLKRVLQA 627


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 833 ARNTPLHDASETGNIGAAKILLSYNPDITLLNATE--KTALAVAKD 876
           +R+    D S T N     IL +  P+   +NATE  K  L + +D
Sbjct: 82  SRSPDSRDRSNTSNTSKTVILSNKGPEGIQINATELQKIKLEIHRD 127


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/44 (20%), Positives = 21/44 (47%)

Query: 158 LRDTVSELYTQCLQVTLQNRRLRDKSKSCKQVLENIKLSVESYM 201
           L+D++ ++  QC+       +     K  + V++ +K  +  YM
Sbjct: 90  LKDSIRKIIRQCVDNAKNEDKCLTAQKFSRCVIDYVKFHITQYM 133


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 833 ARNTPLHDASETGNIGAAKILLSYNPDITLLNATE--KTALAVAKD 876
           +R+    D S T N     IL    P+   +NATE  K  L + +D
Sbjct: 82  SRSPDSRDRSNTSNTSKTVILSDKGPEGIQINATELQKIKLEIHRD 127


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 833 ARNTPLHDASETGNIGAAKILLSYNPDITLLNATE--KTALAVAKD 876
           +R+    D S T N     IL +  P+   +NATE  K  L + +D
Sbjct: 82  SRSPDSRDRSNTSNTSKTIILSNKGPEGIQINATELQKIKLEIHRD 127


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query: 56  AHLLVPSDELPETHFNTLTEKQVTVLNKVITVEVSK 91
           A +   S + P   ++T+T +   ++N+++TV  SK
Sbjct: 122 AQIKTGSYDYPSPEWDTVTPEAKNLINQMLTVNPSK 157


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 833 ARNTPLHDASETGNIGAAKILLSYNPDITLLNATE--KTALAVAKD 876
           +R+    D S T N     IL    P+   +NATE  K  L + +D
Sbjct: 82  SRSPDSRDKSNTSNTSKTIILSDKGPEGIQINATELQKIKLEIHRD 127


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.133    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,921
Number of Sequences: 429
Number of extensions: 10545
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 8
length of query: 896
length of database: 140,377
effective HSP length: 64
effective length of query: 832
effective length of database: 112,921
effective search space: 93950272
effective search space used: 93950272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)