Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000172-TA|BGIBMGA000172-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
         (285 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    33   0.062
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    28   1.8  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    28   1.8  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    27   4.1  
SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces pomb...    26   7.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   9.4  

>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 32.7 bits (71), Expect = 0.062
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 151 TAHVVT-NYVTQDLLDSNAYFHDAFSRSWHYRLAWLFPPPSLIPRVLDHLNSASGRYILV 209
           TAH+ T +Y     + S   F D+FS     ++  +  P  +IPR+ D LN  + + +  
Sbjct: 541 TAHLTTPHYEPLRFICSQVGFDDSFSGD-DKQVVDVVAPSFVIPRLDDILNKIADKPLYS 599

Query: 210 APKWKKPFWRPDLK 223
              W+  F RPD K
Sbjct: 600 PDDWELYFTRPDGK 613


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)

Query: 151 TAHVVTNYVTQDLLDSNAYFHDAF 174
           T  VV NY   +LL+ NAYF D+F
Sbjct: 513 TPQVVVNYA--NLLEENAYFEDSF 534


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 3/74 (4%)

Query: 199 LNSASGRYILVAPKWKKPFWRPDLKTRALRRPVKLRDLSTSLVDTMTMLPPAHVSNLHLE 258
           LNS     + + P  K   ++ DL  +    P++  +  ++++ + + LP  + S+ +LE
Sbjct: 831 LNSLQKFSLTLTPPQKPQKFKRDLNVQRSLSPIQ--NAGSAMLPSFSNLPNLYSSS-YLE 887

Query: 259 AWLILGKYELKSTN 272
            W +  +Y+ + +N
Sbjct: 888 EWNVFAQYKRRESN 901


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 166 SNAYFHDAFSRSWHYRLAWLFP--PPS 190
           S+ YF + F R +  R  WLFP  PPS
Sbjct: 315 SDDYFPEIFKRHFLNRKRWLFPSIPPS 341


>SPAC29E6.07 ||SPAC30.11|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/12 (75%), Positives = 10/12 (83%)

Query: 245 TMLPPAHVSNLH 256
           T+LPPAH  NLH
Sbjct: 95  TILPPAHTKNLH 106


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 174 FSRSWHYRLAWLFPPPSLIP 193
           +S++ H+ L +LF PP+  P
Sbjct: 289 YSKTMHFLLTYLFEPPTSFP 308


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.133    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,132,683
Number of Sequences: 5004
Number of extensions: 40351
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 6
length of query: 285
length of database: 2,362,478
effective HSP length: 72
effective length of query: 213
effective length of database: 2,002,190
effective search space: 426466470
effective search space used: 426466470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)